RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 KCNJ11Q14654 390 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SIX1Q15475 284 aaPredicted RBP13.06□□□□□ -0.32
CXCL12-202ENST00000374426 ZNF630Q2M218 657 aaPredicted RBP13.06□□□□□ -0.32
CXCL12-202ENST00000374426 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.06□□□□□ -0.32
CXCL12-202ENST00000374426 RNF187Q5TA31 235 aaPredicted RBP13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SDCCAG8Q86SQ7 713 aaPredicted RBP13.06□□□□□ -0.32
CXCL12-202ENST00000374426 PLD3Q8IV08 490 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SPNS2Q8IVW8 549 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SHISA5Q8N114 240 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 TXLNBQ8N3L3 684 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 PPFIBP2Q8ND30 876 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SUN3Q8TAQ9 357 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 ZNF480Q8WV37 535 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 RERGQ96A58 199 aaPredicted RBP13.06□□□□□ -0.32
CXCL12-202ENST00000374426 TCF12Q99081 682 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 TUBB6Q9BUF5 446 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 VN1R1Q9GZP7 353 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 FAM114A2Q9NRY5 505 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SYBUQ9NX95 663 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 STMN3Q9NZ72 180 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 SH3BGRL2Q9UJC5 107 aa13.06□□□□□ -0.32
CXCL12-202ENST00000374426 IGHV3-20A0A0C4DH32 117 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 TXNDC9O14530 226 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 HAT1O14929 419 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 CCNDBP1O95273 360 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 CATP04040 527 aaKnown RBP13.05□□□□□ -0.32
CXCL12-202ENST00000374426 C8orf89P0DMQ9 161 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 PTGER4P35408 488 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 HSD17B2P37059 387 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 CCNG2Q16589 344 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 KCTD19Q17RG1 926 aaPredicted RBP13.05□□□□□ -0.32
CXCL12-202ENST00000374426 MTFR2Q6P444 385 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 RPTNQ6XPR3 784 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 LANCL3Q6ZV70 420 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 GDF7Q7Z4P5 450 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 REXO1L1PQ8IX06 675 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 RNF10Q8N5U6 811 aaKnown RBP13.05□□□□□ -0.32
CXCL12-202ENST00000374426 OR9A4Q8NGU2 314 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 SLC30A3Q99726 388 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 CHST11Q9NPF2 352 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 UTP6Q9NYH9 597 aaKnown RBP13.05□□□□□ -0.32
CXCL12-202ENST00000374426 DRG1Q9Y295 367 aaKnown RBP13.05□□□□□ -0.32
CXCL12-202ENST00000374426 SCN2AQ99250 2005 aa13.05□□□□□ -0.32
CXCL12-202ENST00000374426 SMAPO00193 183 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 AP3B1O00203 1094 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 PFDN6O15212 129 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 SLC19A2O60779 497 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 SEC24DO94855 1032 aaPredicted RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 STATHP02808 62 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 SNRPB2P08579 225 aaKnown RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 OGNP20774 298 aaKnown RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 CLCN7P51798 805 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 ABATP80404 500 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 ZXDCQ2QGD7 858 aaPredicted RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 KIAA0930Q6ICG6 404 aaPredicted RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 DRICH1Q6PGQ1 229 aaPredicted RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 CENPUQ71F23 418 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 PRSS41Q7RTY9 318 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 ADCK2Q7Z695 626 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 CILP2Q8IUL8 1156 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 LRRC56Q8IYG6 542 aaPredicted RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 FBXO15Q8NCQ5 510 aaPredicted RBP13.04□□□□□ -0.32
CXCL12-202ENST00000374426 GIMAP7Q8NHV1 300 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 CYTH2Q99418 400 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 ABCF3Q9NUQ8 709 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 TEKT2Q9UIF3 430 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 SOX13Q9UN79 622 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 MED16Q9Y2X0 877 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 CACNA1CQ13936 2221 aa13.04□□□□□ -0.32
CXCL12-202ENST00000374426 NF1P21359 2839 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 NCOA6Q14686 2063 aaPredicted RBP13.03□□□□□ -0.32
CXCL12-202ENST00000374426 TCRBV7S3A2A0A539 114 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 OR2W5A6NFC9 320 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 ZNF839A8K0R7 811 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 A8MUI8 341 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 E5RI56 91 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 H0YIG0 161 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 H7BY64 318 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 NSA2O95478 260 aaKnown RBP13.03□□□□□ -0.32
CXCL12-202ENST00000374426 F7P08709 466 aaPredicted RBP13.03□□□□□ -0.32
CXCL12-202ENST00000374426 MYBL2P10244 700 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 AVPR1BP47901 424 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 ADORA2A-AS1P86434 159 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 CDK16Q00536 496 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 RBPJQ06330 500 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 C3AR1Q16581 482 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 NDUFA9Q16795 377 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 LONRF1Q17RB8 773 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 BTBD16Q32M84 506 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 MINDY4Q4G0A6 757 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 ZNF766Q5HY98 468 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 ACER2Q5QJU3 275 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 FCRLBQ6BAA4 426 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 PLAG1Q6DJT9 500 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 H3F3CQ6NXT2 135 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 C4orf22Q6V702 233 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 VN1R4Q7Z5H5 301 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 CPEB2Q7Z5Q1 589 aaKnown RBP13.03□□□□□ -0.32
CXCL12-202ENST00000374426 BEST3Q8N1M1 668 aa13.03□□□□□ -0.32
CXCL12-202ENST00000374426 METTL21AQ8WXB1 218 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms