RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 FBXL21Q9UKT6 434 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 PCOLCE2Q9UKZ9 415 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 ZNF839A8K0R7 811 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PRICKLE3O43900 615 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 TGFB1P01137 390 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 IL6P05231 212 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ANPEPP15144 967 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PEBP1P30086 187 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 OXTRP30559 389 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ACTR1BP42025 376 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 RABIFP47224 123 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ACTR1AP61163 376 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 SLC34A1Q06495 639 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ACSM2AQ08AH3 577 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 LAPTM5Q13571 262 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ACSM2BQ68CK6 577 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 AAGABQ6PD74 315 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 TMIGD1Q6UXZ0 262 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 HID1Q8IV36 788 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 FAM20CQ8IXL6 584 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ANKRD53Q8N9V6 530 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 GPR156Q8NFN8 814 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 OR4K1Q8NGD4 311 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 JPH3Q8WXH2 748 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 GFM2Q969S9 779 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 SH3KBP1Q96B97 665 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 TESCQ96BS2 214 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 METTL2AQ96IZ6 378 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PPM1MQ96MI6 270 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 OR51B5Q9H339 312 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PELI2Q9HAT8 420 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 RUVBL1Q9Y265 456 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 TSC22D4Q9Y3Q8 395 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 TDRD6O60522 2096 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 NUP214P35658 2090 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 H7BY64 318 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 KLHL18O94889 574 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ANP32DO95626 131 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 NPPAP01160 153 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 HSD17B1P14061 328 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PIK3CBP42338 1070 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 AP2B1P63010 937 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 EIF2B5Q13144 721 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 SELPLGQ14242 412 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 KRT33BQ14525 404 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 HIST2H2ACQ16777 129 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 C10orf62Q5T681 223 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 ICE2Q659A1 982 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 HIST2H2AA3Q6FI13 130 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 MSRB3Q8IXL7 192 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PRAP1Q96NZ9 151 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 PCBD2Q9H0N5 130 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 SERHLQ9NQF3 203 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 SLC6A13Q9NSD5 602 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 TRNAU1APQ9NX07 287 aaKnown RBP13.25□□□□□ -0.29
PTPRF-202ENST00000372405 VAPAQ9P0L0 249 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 DMTF1Q9Y222 760 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 DGKBQ9Y6T7 804 aa13.25□□□□□ -0.29
PTPRF-202ENST00000372405 EML5Q05BV3 1969 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 A0A1W2PPC4 97 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 FEZF1A0PJY2 475 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 SAP18O00422 153 aaKnown RBP13.24□□□□□ -0.29
PTPRF-202ENST00000372405 TOR1BO14657 336 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 DFNA5O60443 496 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 SLC19A1P41440 591 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 CLNS1AP54105 237 aaKnown RBP13.24□□□□□ -0.29
PTPRF-202ENST00000372405 MRPS22P82650 360 aaKnown RBP13.24□□□□□ -0.29
PTPRF-202ENST00000372405 REEP5Q00765 189 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 PRDX1Q06830 199 aaKnown RBP13.24□□□□□ -0.29
PTPRF-202ENST00000372405 PWP1Q13610 501 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 FZD2Q14332 565 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 MAPKAPK3Q16644 382 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 UGT8Q16880 541 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 SPIN4Q56A73 249 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 GPR153Q6NV75 609 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 GALNT18Q6P9A2 607 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 SYT12Q8IV01 421 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 OR52E6Q96RD3 313 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 CGREF1Q99674 301 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 KIR3DX1Q9H7L2 352 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 SPHK1Q9NYA1 384 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 SLC25A37Q9NYZ2 338 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 USP22Q9UPT9 525 aa13.24□□□□□ -0.29
PTPRF-202ENST00000372405 TRBV23OR9-2A0A075B6M9 112 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 SPTY2D1-AS1A0A0U1RR47 76 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 AKAP10O43572 662 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ZNF217O75362 1048 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 CELA2BP08218 269 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 HOXB9P17482 250 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 TIA1P31483 386 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 GCKP35557 465 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 CCR8P51685 355 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 C21orf58P58505 322 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 CSNK1G2P78368 415 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 TRAP1Q12931 704 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 MTAPQ13126 283 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 RBBP5Q15291 538 aaKnown RBP13.23□□□□□ -0.29
PTPRF-202ENST00000372405 ZNF542PQ5EBM4 170 aa13.23□□□□□ -0.29
PTPRF-202ENST00000372405 COMMD6Q7Z4G1 85 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms