RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 CCR8P51685 355 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 REEP5Q00765 189 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 MEF2AQ02078 507 aaPredicted RBP14.87□□□□□ -0.03
LIMS1-202ENST00000338045 ACSM2AQ08AH3 577 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 TCEA2Q15560 299 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 SPIN4Q56A73 249 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 ACSM2BQ68CK6 577 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 PRMT9Q6P2P2 845 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 GALNT18Q6P9A2 607 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 IYDQ6PHW0 289 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 LAYNQ6UX15 382 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 VN1R5Q7Z5H4 357 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 TMEM74Q96NL1 305 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 NMRK1Q9NWW6 199 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 OR6C2Q9NZP2 312 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 ABCD2Q9UBJ2 740 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 ADGRE2Q9UHX3 823 aa14.87□□□□□ -0.03
LIMS1-202ENST00000338045 IGKV1-8A0A0C4DH67 115 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 IL6P05231 212 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 PEBP1P30086 187 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 BLKP51451 505 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CLNS1AP54105 237 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 C21orf58P58505 322 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 RAE1P78406 368 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 IQCHQ86VS3 1027 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 RIMKLAQ8IXN7 391 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 PHACTR4Q8IZ21 702 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 KRTCAP2Q8N6L1 136 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 NUDT8Q8WV74 236 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 ZFPM2Q8WW38 1151 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 TESCQ96BS2 214 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CCDC124Q96CT7 223 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CXorf40BQ96DE9 158 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 SLC39A3Q9BRY0 314 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CAAP1Q9H8G2 361 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 RNPEPL1Q9HAU8 725 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 TAAR2Q9P1P5 351 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CD300AQ9UGN4 299 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 INVSQ9Y283 1065 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 AXIN1O15169 862 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 PRMT3O60678 531 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 LMNAP02545 664 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 WNT1P04628 370 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 ME2P23368 584 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 DGKQP52824 942 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 RACK1P63244 317 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CSNK1G2P78368 415 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 PHEXP78562 749 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 ABATP80404 500 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 RPL6Q02878 288 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 BIRC2Q13490 618 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 NFYCQ13952 458 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 FAM174BQ3ZCQ3 159 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 SLC36A4Q6YBV0 504 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 AMIGO1Q86WK6 493 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 DEFB119Q8N690 84 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 C1orf52Q8N6N3 182 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 ENDOVQ8N8Q3 282 aaKnown RBP14.86□□□□□ -0.03
LIMS1-202ENST00000338045 CLHC1Q8NHS4 586 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 SPACA7Q96KW9 195 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 TSSK3Q96PN8 268 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 ADA2Q9NZK5 511 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 DLGAP2Q9P1A6 1054 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 PACSIN3Q9UKS6 424 aa14.86□□□□□ -0.03
LIMS1-202ENST00000338045 FANCMQ8IYD8 2048 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 H7BY64 318 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 TRIM38O00635 465 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 PGRP06401 933 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 XRCC1P18887 633 aaPredicted RBP14.85□□□□□ -0.03
LIMS1-202ENST00000338045 PRPS1L1P21108 318 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SLC6A2P23975 617 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 CD38P28907 300 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SERPINB1P30740 379 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SPANXN4Q5MJ08 99 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SAMD4BQ5PRF9 694 aaKnown RBP14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SLC2A7Q6PXP3 512 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 PRR23BQ6ZRT6 265 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 ARMCX6Q7L4S7 300 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIMS1-202ENST00000338045 ANKRD53Q8N9V6 530 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 C1orf216Q8TAB5 229 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SLC13A3Q8WWT9 602 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 LCN9Q8WX39 176 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 EGLN2Q96KS0 407 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 PRAP1Q96NZ9 151 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 DCLRE1BQ9H816 532 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 SPHK1Q9NYA1 384 aa14.85□□□□□ -0.03
LIMS1-202ENST00000338045 PRORSD1PA6NEY8 169 aa14.84□□□□□ -0.03
LIMS1-202ENST00000338045 OR5K4A6NMS3 321 aa14.84□□□□□ -0.03
LIMS1-202ENST00000338045 MYO1DO94832 1006 aa14.84□□□□□ -0.03
LIMS1-202ENST00000338045 TBX6O95947 436 aaPredicted RBP14.84□□□□□ -0.03
LIMS1-202ENST00000338045 TGFB1P01137 390 aa14.84□□□□□ -0.03
LIMS1-202ENST00000338045 CELA2BP08218 269 aaPredicted RBP14.84□□□□□ -0.03
LIMS1-202ENST00000338045 CHRM5P08912 532 aaPredicted RBP14.84□□□□□ -0.03
LIMS1-202ENST00000338045 PTX3P26022 381 aaPredicted RBP14.84□□□□□ -0.03
LIMS1-202ENST00000338045 TIA1P31483 386 aaKnown RBP eCLIP14.84□□□□□ -0.03
LIMS1-202ENST00000338045 SLC7A2P52569 658 aa14.84□□□□□ -0.03
LIMS1-202ENST00000338045 RBBP5Q15291 538 aaKnown RBP14.84□□□□□ -0.03
LIMS1-202ENST00000338045 ZNF542PQ5EBM4 170 aa14.84□□□□□ -0.03
LIMS1-202ENST00000338045 DLEU7Q6UYE1 221 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms