RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C8orf82Q6P1X6 216 aaPredicted RBP15.86■□□□□ 0.13
USP4-201ENST00000265560 DLEU7Q6UYE1 221 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 VN1R5Q7Z5H4 357 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 MMP21Q8N119 569 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 CLEC4FQ8N1N0 589 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 SLC13A3Q8WWT9 602 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 IKZF5Q9H5V7 419 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 TBC1D17Q9HA65 648 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 MRGBPQ9NV56 204 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 NDE1Q9NXR1 346 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 IGHV1OR15-9A0A0B4J2B8 117 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 IGKV1-8A0A0C4DH67 115 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 BBIP1A8MTZ0 92 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 ANPEPP15144 967 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 MAD2L1Q13257 205 aaPredicted RBP15.86■□□□□ 0.13
USP4-201ENST00000265560 TSSK4Q6SA08 328 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.86■□□□□ 0.13
USP4-201ENST00000265560 FCRL4Q96PJ5 515 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 RMI1Q9H9A7 625 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 GID8Q9NWU2 228 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 ACOT8O14734 319 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 OR1F1O43749 312 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 SLC19A1P41440 591 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 RAB28P51157 221 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 KIAA1024LP59773 190 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 TRIM25Q14258 630 aaKnown RBP15.85■□□□□ 0.13
USP4-201ENST00000265560 NRROSQ86YC3 692 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 FBXL6Q8N531 539 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 OR2A1Q8NGT9 310 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 SMPDL3AQ92484 453 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 ROPN1LQ96C74 230 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 F2RL3Q96RI0 385 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 CLMPQ9H6B4 373 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 S100A14Q9HCY8 104 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 MUTYHQ9UIF7 546 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 CDKN2CP42773 168 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 GRIK2Q13002 908 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 HIST2H2ACQ16777 129 aaPredicted RBP15.85■□□□□ 0.13
USP4-201ENST00000265560 HIST2H2AA3Q6FI13 130 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 DGLUCYQ7Z3D6 616 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 OR10G6Q8NH81 332 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 MIEF2Q96C03 454 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 SCARF2Q96GP6 870 aaPredicted RBP15.85■□□□□ 0.13
USP4-201ENST00000265560 TBCDQ9BTW9 1192 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 DMRT3Q9NQL9 472 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 CD300AQ9UGN4 299 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 AK5Q9Y6K8 562 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 PRR19A6NJB7 356 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 ISM1B1AKI9 464 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 PRAMEF26H0Y7S4 382 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 YY2O15391 372 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 KLK1P06870 262 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 PLCL1Q15111 1095 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 TRIM73Q86UV7 250 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 FAM129CQ86XR2 697 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 ENDOVQ8N8Q3 282 aaKnown RBP15.85■□□□□ 0.13
USP4-201ENST00000265560 LCN9Q8WX39 176 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 GTF2H4Q92759 462 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 TMEM125Q96AQ2 219 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 EFCAB11Q9BUY7 163 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 SYNPO2LQ9H987 977 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.85■□□□□ 0.13
USP4-201ENST00000265560 ERVK-11Q9UQG0 969 aa15.85■□□□□ 0.13
USP4-201ENST00000265560 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 PRAMEF10O60809 474 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 TBX6O95947 436 aaPredicted RBP15.84■□□□□ 0.13
USP4-201ENST00000265560 PDGFBP01127 241 aaPredicted RBP15.84■□□□□ 0.13
USP4-201ENST00000265560 PEBP1P30086 187 aaKnown RBP15.84■□□□□ 0.13
USP4-201ENST00000265560 CCR3P51677 355 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 CYP2A13Q16696 494 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 PRRT3Q5FWE3 981 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 ICE2Q659A1 982 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 LCTLQ6UWM7 567 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 SPPL2CQ8IUH8 684 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 TMEFF1Q8IYR6 380 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 DENND6BQ8NEG7 585 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 CXorf40BQ96DE9 158 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 APBB3O95704 486 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 LAMP1P11279 417 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 S100A3P33764 101 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 CASP9P55211 416 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 CLDN8P56748 225 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 LIPEQ05469 1076 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 SLC34A1Q06495 639 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 DMWDQ09019 674 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 PAGE2BQ5JRK9 111 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 LPCAT4Q643R3 524 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 COMMD6Q7Z4G1 85 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 ADHFE1Q8IWW8 467 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 CLECL1Q8IZS7 167 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 C10orf111Q8N326 155 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 THUMPD3Q9BV44 507 aaKnown RBP15.84■□□□□ 0.13
USP4-201ENST00000265560 SLC25A37Q9NYZ2 338 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 PCDHA9Q9Y5H5 950 aa15.84■□□□□ 0.13
USP4-201ENST00000265560 GSK3BP49841 420 aa15.83■□□□□ 0.13
USP4-201ENST00000265560 AP2B1P63010 937 aa15.83■□□□□ 0.13
USP4-201ENST00000265560 CSTF3Q12996 717 aaKnown RBP15.83■□□□□ 0.13
USP4-201ENST00000265560 EIF2B5Q13144 721 aaKnown RBP15.83■□□□□ 0.13
USP4-201ENST00000265560 UGT8Q16880 541 aa15.83■□□□□ 0.13
USP4-201ENST00000265560 SAMD4BQ5PRF9 694 aaKnown RBP15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms