RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 GIMAP7Q8NHV1 300 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 ZNF480Q8WV37 535 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 ASB11Q8WXH4 323 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 CNDP1Q96KN2 507 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 SLC30A3Q99726 388 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 C14orf105Q9NVL8 296 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 UTP6Q9NYH9 597 aaKnown RBP16.28■□□□□ 0.2
CLN3-216ENST00000565316 TRPC4Q9UBN4 977 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 TAC3Q9UHF0 121 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 ABCA12Q86UK0 2595 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 E5RI56 91 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 GFYI3L273 518 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 FOXS1O43638 330 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 CCNDBP1O95273 360 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 SERPINA7P05543 415 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 PRR35P0CG20 571 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 EMP2P54851 167 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 ABATP80404 500 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 HKDC1Q2TB90 917 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 ZNF787Q6DD87 383 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 CYHR1Q6ZMK1 362 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 MCUQ8NE86 351 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 CATSPER1Q8NEC5 780 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 KCNJ9Q92806 393 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 SLX1AQ9BQ83 275 aa16.27■□□□□ 0.2
CLN3-216ENST00000565316 MKKSQ9NPJ1 570 aaPredicted RBP16.27■□□□□ 0.2
CLN3-216ENST00000565316 LOC102723996A0A087X1L8 192 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 IGHV1-45A0A0A0MS14 117 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 NSG1A0A0A6YYJ2 146 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 ZCWPW2A0A1B0GU75 182 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 SDR42E2A6NKP2 422 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 TXNDC9O14530 226 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 MPC1LP0DKB6 136 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 CXCR5P32302 372 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 SKIV2L2P42285 1042 aaKnown RBP16.26■□□□□ 0.19
CLN3-216ENST00000565316 DHX34Q14147 1143 aaKnown RBP16.26■□□□□ 0.19
CLN3-216ENST00000565316 TTLL9Q3SXZ7 439 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 ZNF324BQ6AW86 544 aaPredicted RBP16.26■□□□□ 0.19
CLN3-216ENST00000565316 ZNF470Q6ECI4 717 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 TTC27Q6P3X3 843 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 CASC4Q6P4E1 433 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 ZNF549Q6P9A3 640 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 XAB2Q9HCS7 855 aaKnown RBP16.26■□□□□ 0.19
CLN3-216ENST00000565316 SAMD15Q9P1V8 674 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 DHRS7Q9Y394 339 aa16.26■□□□□ 0.19
CLN3-216ENST00000565316 HEATR5BQ9P2D3 2071 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 SMAPO00193 183 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 BMP10O95393 424 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 KRT14P02533 472 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 ENO3P13929 434 aaPredicted RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 CXCR2P25025 360 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 MAGEA3P43357 314 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 VPS41P49754 854 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 TERF1P54274 439 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 CTBP1Q13363 440 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 TSTA3Q13630 321 aaPredicted RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 FAM53BQ14153 422 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 TMEM205Q6UW68 189 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 RIPOR1Q6ZS17 1223 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 DENND6AQ8IWF6 608 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 ZC3H7AQ8IWR0 971 aaKnown RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 PPFIBP2Q8ND30 876 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 OR1N1Q8NGS0 311 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 BRIX1Q8TDN6 353 aaKnown RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 HAS2Q92819 552 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 RERGQ96A58 199 aaPredicted RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 ZNF669Q96BR6 464 aaPredicted RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 MMABQ96EY8 250 aaPredicted RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 EBNA1BP2Q99848 306 aaKnown RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 DRC3Q9H069 523 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 ZNF700Q9H0M5 742 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 PCYOX1Q9UHG3 505 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 OSGIN2Q9Y236 505 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 MRPS2Q9Y399 296 aaKnown RBP16.25■□□□□ 0.19
CLN3-216ENST00000565316 NEU2Q9Y3R4 380 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 CACNA1DQ01668 2161 aa16.25■□□□□ 0.19
CLN3-216ENST00000565316 DIDO1Q9BTC0 2240 aaKnown RBP16.24■□□□□ 0.19
CLN3-216ENST00000565316 CTAGE9A4FU28 777 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 FFAR3O14843 346 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 HAT1O14929 419 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 GPR42O15529 346 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 P2RX6O15547 441 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 LRRTM2O43300 516 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 HEXBP07686 556 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 F7P08709 466 aaPredicted RBP16.24■□□□□ 0.19
CLN3-216ENST00000565316 ANXA5P08758 320 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 STSP08842 583 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 TNFSF10P50591 281 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 EEF1A2Q05639 463 aaKnown RBP16.24■□□□□ 0.19
CLN3-216ENST00000565316 THOC5Q13769 683 aaKnown RBP16.24■□□□□ 0.19
CLN3-216ENST00000565316 FAM180AQ6UWF9 173 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 SPNS2Q8IVW8 549 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 LMNTD2Q8IXW0 634 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 RASGEF1CQ8N431 466 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 BCORP1Q8N888 145 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 SERPINB12Q96P63 405 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 YIPF2Q9BWQ6 316 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 FBXO6Q9NRD1 293 aaPredicted RBP16.24■□□□□ 0.19
CLN3-216ENST00000565316 RIC8BQ9NVN3 520 aa16.24■□□□□ 0.19
CLN3-216ENST00000565316 PLA2G3Q9NZ20 509 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms