RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 BRIX1Q8TDN6 353 aaKnown RBP11.07□□□□□ -0.64
USP3-220ENST00000561381 FAR1Q8WVX9 515 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 TCF12Q99081 682 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 YIPF2Q9BWQ6 316 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ABCF3Q9NUQ8 709 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 PLA2G3Q9NZ20 509 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 TRPC4Q9UBN4 977 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 TAC3Q9UHF0 121 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 OSGIN2Q9Y236 505 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 ZKSCAN5Q9Y2L8 839 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 MED16Q9Y2X0 877 aa11.07□□□□□ -0.64
USP3-220ENST00000561381 NSG1A0A0A6YYJ2 146 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 IDSB3KWA1 339 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 E5RI56 91 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 P2RX6O15547 441 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 LRRTM2O43300 516 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 FOXS1O43638 330 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 SLC16A8O95907 504 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 STATHP02808 62 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 PRR35P0CG20 571 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 EFNA3P52797 238 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 PNLIPRP1P54315 467 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 EMP2P54851 167 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 EEF1A2Q05639 463 aaKnown RBP11.06□□□□□ -0.64
USP3-220ENST00000561381 PRDX1Q06830 199 aaKnown RBP11.06□□□□□ -0.64
USP3-220ENST00000561381 GPS1Q13098 491 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 TLR1Q15399 786 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 SYT16Q17RD7 645 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 ICE2Q659A1 982 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 B3GNTL1Q67FW5 361 aaPredicted RBP11.06□□□□□ -0.64
USP3-220ENST00000561381 ZNF470Q6ECI4 717 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 ZNF425Q6IV72 752 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 TTC27Q6P3X3 843 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 CASC4Q6P4E1 433 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 ZNF549Q6P9A3 640 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 PLD3Q8IV08 490 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 DENND6AQ8IWF6 608 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 SIRT6Q8N6T7 355 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 OR1N1Q8NGS0 311 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 PSMF1Q92530 271 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 MMABQ96EY8 250 aaPredicted RBP11.06□□□□□ -0.64
USP3-220ENST00000561381 VPS50Q96JG6 964 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 OR2A5Q96R48 311 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 LMF1Q96S06 567 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 TMUB1Q9BVT8 246 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 FBXO6Q9NRD1 293 aaPredicted RBP11.06□□□□□ -0.64
USP3-220ENST00000561381 PTGFRNQ9P2B2 879 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 PCYOX1Q9UHG3 505 aa11.06□□□□□ -0.64
USP3-220ENST00000561381 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 IGHV1-45A0A0A0MS14 117 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 A0A0A6YYC8 382 aaPredicted RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 E7ENX8 843 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 GOLGA8MH3BSY2 632 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 I3L1I5 382 aaPredicted RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 HAT1O14929 419 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 PFDN6O15212 129 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 VPS26AO75436 327 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 USP1O94782 785 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 SYF2O95926 243 aaKnown RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 F10P00742 488 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 CATP04040 527 aaKnown RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 SOX11P35716 441 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 SLC26A3P40879 764 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 MAGEA6P43360 314 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 ARG2P78540 354 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 MAT1AQ00266 395 aaKnown RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 TAP2Q03519 686 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 CTBP1Q13363 440 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 DHX34Q14147 1143 aaKnown RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 ARHGAP19Q14CB8 494 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 NAA25Q14CX7 972 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 NDUFAF7Q7L592 441 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 KBTBD2Q8IY47 623 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 AGGF1Q8N302 714 aaeCLIP11.05□□□□□ -0.64
USP3-220ENST00000561381 COG1Q8WTW3 980 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 ZNF480Q8WV37 535 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 MAIP1Q8WWC4 291 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 ZNF669Q96BR6 464 aaPredicted RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 FAM114A2Q9NRY5 505 aa11.05□□□□□ -0.64
USP3-220ENST00000561381 MRPS2Q9Y399 296 aaKnown RBP11.05□□□□□ -0.64
USP3-220ENST00000561381 ZCWPW2A0A1B0GU75 182 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 FAM237BA0A1B0GVD1 139 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 CTAGE9A4FU28 777 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 GOLGA6L6A8MZA4 724 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 KIF5CO60282 957 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 JRKO75564 520 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 KRT14P02533 472 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 ANXA5P08758 320 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 CCDC175P0C221 793 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 EDN3P14138 238 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 PAMP19021 973 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 KCNK10P57789 538 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 SRSF11Q05519 484 aaKnown RBP11.04□□□□□ -0.64
USP3-220ENST00000561381 FAM180AQ6UWF9 173 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 CYHR1Q6ZMK1 362 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 ZNF662Q6ZS27 426 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 ADCK2Q7Z695 626 aa11.04□□□□□ -0.64
USP3-220ENST00000561381 ZC3H7AQ8IWR0 971 aaKnown RBP11.04□□□□□ -0.64
USP3-220ENST00000561381 LRRC56Q8IYG6 542 aaPredicted RBP11.04□□□□□ -0.64
USP3-220ENST00000561381 ASB11Q8WXH4 323 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms