RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NCF1P14598 390 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 RORAP35398 523 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 CCR8P51685 355 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 TMPRSS3P57727 454 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 CSNK1G2P78368 415 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 TECRLQ5HYJ1 363 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 MANEAQ5SRI9 462 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 RHBDD2Q6NTF9 364 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 ZNF517Q6ZMY9 492 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 LRRC70Q7Z2Q7 622 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 TIPARPQ7Z3E1 657 aaKnown RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 GALNT6Q8NCL4 622 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 OR4K1Q8NGD4 311 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 MZB1Q8WU39 189 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 RERGQ96A58 199 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 ALKBH8Q96BT7 664 aaKnown RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 CLIP3Q96DZ5 547 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 NAF1Q96HR8 494 aaKnown RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 PRAP1Q96NZ9 151 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 OR2A5Q96R48 311 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 OR4K3Q96R72 315 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 TMEM79Q9BSE2 394 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 SLC7A5P2Q9GIP4 190 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 PITHD1Q9GZP4 211 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 EHD1Q9H4M9 534 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 PELI2Q9HAT8 420 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 LHX9Q9NQ69 397 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 PCMTD2Q9NV79 361 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 CUEDC1Q9NWM3 386 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 FRYQ5TBA9 3013 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 SDK2Q58EX2 2172 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 ANKRD11Q6UB99 2663 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 USP24Q9UPU5 2620 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 A0A0J9YVX5 310 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 SUPT3HB4E1H0 165 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 MEN1O00255 615 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 HAT1O14929 419 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 HCRTR1O43613 425 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 KLK8O60259 260 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 SUPT3HO75486 399 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 WDR47O94967 919 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 NTRK1P04629 796 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 GSTA1P08263 222 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 CDH1P12830 882 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 GNAZP19086 355 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 GCGRP47871 477 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 ALDH18A1P54886 795 aaKnown RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 VSX2P58304 361 aaPredicted RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 YBX1P67809 324 aaKnown RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 CDC16Q13042 620 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 TGIF1Q15583 401 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 FAM214AQ32MH5 1076 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 GARNL3Q5VVW2 1013 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 FRMPD2BQ6IN97 320 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 FBXO42Q6P3S6 717 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 DSELQ8IZU8 1212 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 ZNF655Q8N720 491 aaPredicted RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 EXT2Q93063 718 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 NEIL2Q969S2 332 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 MVB12AQ96EY5 273 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 MRPL57Q9BQC6 102 aaKnown RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 NLNQ9BYT8 704 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 CD244Q9BZW8 370 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 ROPN1BQ9BZX4 212 aaPredicted RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 MRPL46Q9H2W6 279 aaKnown RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 ROPN1Q9HAT0 212 aaPredicted RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 TXLNGQ9NUQ3 528 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 DNAJC11Q9NVH1 559 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 XPR1Q9UBH6 696 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 KCND3Q9UK17 655 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 SLC22A14Q9Y267 594 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 TNPO3Q9Y5L0 923 aaKnown RBP12.44□□□□□ -0.42
NEDD8-208ENST00000560427 EPG5Q9HCE0 2579 aa12.44□□□□□ -0.42
NEDD8-208ENST00000560427 A0A1B0GX78 115 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 TRBC2A0A5B9 178 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 H0YGG7 62 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 UBXN8O00124 270 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 TAPBPO15533 448 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 NRP2O60462 931 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 ERLIN1O75477 346 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 CD63P08962 238 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 MTHFD2P13995 350 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GFAPP14136 432 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 AGXTP21549 392 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 CXCR2P25025 360 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GSTM2P28161 218 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GMPRP36959 345 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GLRBP48167 497 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 KCNC1P48547 511 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 PIK3CGP48736 1102 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 HSPA7P48741 367 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 ARF3P61204 181 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 REEP5Q00765 189 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 IFFO1Q0D2I5 559 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 GPS2Q13227 327 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 NAA30Q147X3 362 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-208ENST00000560427 SETDB1Q15047 1291 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 PDK4Q16654 411 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 PRTGQ2VWP7 1150 aa12.43□□□□□ -0.42
NEDD8-208ENST00000560427 WASHC2DQ5SRD0 308 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms