RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FAAH2Q6GMR7 532 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CUZD1Q86UP6 607 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CISD2Q8N5K1 135 aaKnown RBP16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CSNK1A1LQ8N752 337 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 SLCO2A1Q92959 643 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 PNPLA2Q96AD5 504 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 SNRNP40Q96DI7 357 aaKnown RBP16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CFAP36Q96G28 342 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CCDC138Q96M89 665 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 PRAP1Q96NZ9 151 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 IP6K3Q96PC2 410 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 FAM167BQ9BTA0 163 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ATG10Q9H0Y0 220 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CCDC68Q9H2F9 335 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 ATP13A2Q9NQ11 1180 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 SLAMF7Q9NQ25 335 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 MAP10Q9P2G4 905 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 KLHL42Q9P2K6 505 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 CHMP2BQ9UQN3 213 aa16.88■□□□□ 0.29
HDDC3-205ENST00000559898 A0A0A6YYC8 382 aaPredicted RBP16.87■□□□□ 0.29
HDDC3-205ENST00000559898 GOLGA6L10A0A0M3HER8 536 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 BLACEA4D250 179 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 I3L1I5 382 aaPredicted RBP16.87■□□□□ 0.29
HDDC3-205ENST00000559898 TSPAN12O95859 305 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 SOX8P57073 446 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 TBPL1P62380 186 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 RBBP7Q16576 425 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 EIF2S3LQ2VIR3 472 aaKnown RBP16.87■□□□□ 0.29
HDDC3-205ENST00000559898 CRB2Q5IJ48 1285 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 VN1R4Q7Z5H5 301 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 ADCK2Q7Z695 626 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 ATCAYQ86WG3 371 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 FAM26EQ8N5C1 309 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 EFCAB3Q8N7B9 438 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 OLFM1Q99784 485 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 CRB3Q9BUF7 120 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 ASF1BQ9NVP2 202 aa16.87■□□□□ 0.29
HDDC3-205ENST00000559898 SCN2AQ99250 2005 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 FEZF1A0PJY2 475 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 OR2W5A6NFC9 320 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 TTI1O43156 1089 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 VPS4BO75351 444 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 VPS26AO75436 327 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 JRKO75564 520 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 KLHL18O94889 574 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 CD63P08962 238 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 PIM1P11309 404 aaPredicted RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 ENO3P13929 434 aaPredicted RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 FBLP22087 321 aaKnown RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 AIMP2Q13155 320 aaKnown RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 FASTKD3Q14CZ7 662 aaKnown RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 MUM1Q2TAK8 710 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 TEDDM1Q5T9Z0 273 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 THEMIS2Q5TEJ8 643 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 ANKMY2Q8IV38 441 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 CNTN4Q8IWV2 1026 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 GALNT11Q8NCW6 608 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 CALML6Q8TD86 181 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 ALKBH8Q96BT7 664 aaKnown RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 MIEF2Q96C03 454 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 MMABQ96EY8 250 aaPredicted RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 LINGO1Q96FE5 620 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 CERS2Q96G23 380 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 YIPF2Q9BWQ6 316 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 TRIM31Q9BZY9 425 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 ZNF160Q9HCG1 818 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 C5AR2Q9P296 337 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 ZNF282Q9UDV7 671 aaPredicted RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 TRMT6Q9UJA5 497 aaKnown RBP16.86■□□□□ 0.29
HDDC3-205ENST00000559898 C3orf18Q9UK00 162 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 VPS4AQ9UN37 437 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 PSAT1Q9Y617 370 aa16.86■□□□□ 0.29
HDDC3-205ENST00000559898 IGLV3-12A0A075B6K2 115 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 ZBTB14O43829 449 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 LCMT2O60294 686 aaKnown RBP16.85■□□□□ 0.29
HDDC3-205ENST00000559898 PIAS1O75925 651 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 ITGA8P53708 1063 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 EEF1A2Q05639 463 aaKnown RBP16.85■□□□□ 0.29
HDDC3-205ENST00000559898 TUBB8Q3ZCM7 444 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 SPANXN3Q5MJ09 141 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 ATG9BQ674R7 924 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 HIBCHQ6NVY1 386 aaPredicted RBP16.85■□□□□ 0.29
HDDC3-205ENST00000559898 TMEM207Q6UWW9 146 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 IGFL3Q6UXB1 125 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 LMNTD2Q8IXW0 634 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 THOC3Q96J01 351 aaKnown RBP16.85■□□□□ 0.29
HDDC3-205ENST00000559898 PSMG3-AS1Q96PY0 264 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 TRPC4Q9UBN4 977 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 B3GNT3Q9Y2A9 372 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 COMMD10Q9Y6G5 202 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 TEX264Q9Y6I9 313 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 ESPL1Q14674 2120 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 LRRK2Q5S007 2527 aa16.85■□□□□ 0.29
HDDC3-205ENST00000559898 CTAGE15A4D2H0 777 aa16.84■□□□□ 0.29
HDDC3-205ENST00000559898 COX6A1P12074 109 aa16.84■□□□□ 0.29
HDDC3-205ENST00000559898 EZRP15311 586 aaKnown RBP16.84■□□□□ 0.29
HDDC3-205ENST00000559898 TCP1P17987 556 aaKnown RBP16.84■□□□□ 0.29
HDDC3-205ENST00000559898 SLC26A3P40879 764 aa16.84■□□□□ 0.29
HDDC3-205ENST00000559898 GNG11P61952 73 aa16.84■□□□□ 0.29
HDDC3-205ENST00000559898 CSNK1G2P78368 415 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms