RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CENPLQ8N0S6 344 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCNT2Q8N0V5 402 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CADM3Q8N126 398 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 VPS52Q8N1B4 723 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR137CQ8N3F9 429 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM109AQ8N4B1 249 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDCL2Q8N4E4 241 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPEM1Q8N4L4 309 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM199Q8N511 208 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCLK2Q8N568 766 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AADATQ8N5Z0 425 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 C12orf76Q8N812 135 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF611Q8N823 705 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCORP1Q8N888 145 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GBP7Q8N8V2 638 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NECAB1Q8N987 351 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FADS6Q8N9I5 356 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BANPQ8N9N5 519 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SCAIQ8N9R8 606 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 Q8NA96 180 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIDT2Q8NBJ9 832 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLEC1AQ8NC01 280 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM98AQ8NCA5 519 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HJURPQ8NCD3 748 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PAPD5Q8NDF8 572 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSUN7Q8NE18 718 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 STKLD1Q8NE28 680 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM185AQ8NFB2 350 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BBS1Q8NFJ9 593 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BEST2Q8NFU1 509 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR56B1Q8NGI3 324 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52E1Q8NGJ3 308 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52B4Q8NGK2 314 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR2T3Q8NH03 318 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR14A16Q8NHC5 309 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR14L1PQ8NHC6 308 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKR7LQ8NHP1 331 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAFAQ8NHW3 353 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF671Q8TAW3 534 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM110DQ8TAY7 271 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GOLGA5Q8TBA6 731 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC22A8Q8TCC7 542 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEC3Q8TD91 643 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC2A14Q8TDB8 520 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HCAR2Q8TDS4 363 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TAS1R2Q8TE23 839 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC26A7Q8TE54 656 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DQX1Q8TE96 717 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GANCQ8TET4 914 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GIPC3Q8TF64 312 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GDPD5Q8WTR4 605 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHPT1Q8WUD6 406 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM255BQ8WV15 326 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAR1Q8WVX9 515 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSEN15Q8WW01 171 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 C17orf50Q8WW18 174 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAJA4Q8WW22 397 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SELENOMQ8WWX9 145 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 METTL21AQ8WXB1 218 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SOCS4Q8WXH5 440 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATG4AQ8WYN0 398 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNASE2BQ8WZ79 361 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDB2Q92466 427 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSMAFQ92636 917 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KAT2AQ92830 837 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 INPP5DQ92835 1189 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RIT1Q92963 219 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNAPC3Q92966 411 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PEX13Q92968 403 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBXO32Q969P5 355 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NT5C3BQ969T7 300 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCLNQ969V3 563 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC25A28Q96A46 364 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ESAMQ96AP7 390 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CIDECQ96AQ7 238 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MCUR1Q96AQ8 359 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PINX1Q96BK5 328 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DHX58Q96C10 678 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ULK4Q96C45 1275 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RHBDF1Q96CC6 855 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBXL8Q96CD0 374 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NXNL1Q96CM4 212 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AP2M1Q96CW1 435 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 COQ8BQ96D53 544 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC39Q96DD0 335 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PABPC5Q96DU9 382 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RTP4Q96DX8 246 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERLEC1Q96DZ1 483 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NRBF2Q96F24 287 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RRNAD1Q96FB5 475 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LINGO1Q96FE5 620 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DTD2Q96FN9 168 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PGM2Q96G03 612 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 P2RY11Q96G91 374 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC41A3Q96GZ6 507 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MSANTD3Q96H12 275 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDYHV1Q96HA8 205 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGSF21Q96ID5 467 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZBED3Q96IU2 234 aaPredicted RBP0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms