RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PHEXP78562 749 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 PPP2R2BQ00005 443 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 NAE1Q13564 534 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 DOC2AQ14183 400 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 PYCR3Q53H96 274 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 ZC3H12BQ5HYM0 836 aaKnown RBP11.6□□□□□ -0.55
NUP54-202ENST00000502850 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.6□□□□□ -0.55
NUP54-202ENST00000502850 CPZQ66K79 652 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 CAPN13Q6MZZ7 669 aaPredicted RBP11.6□□□□□ -0.55
NUP54-202ENST00000502850 ZNF773Q6PK81 442 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 ENPP6Q6UWR7 440 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 PARS2Q7L3T8 475 aaKnown RBP11.6□□□□□ -0.55
NUP54-202ENST00000502850 CAMKMTQ7Z624 323 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 THAP5Q7Z6K1 395 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 NAT16Q8N8M0 369 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 SPPL3Q8TCT6 385 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 OR8D1Q8WZ84 308 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 MED8Q96G25 268 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 MAGED4Q96JG8 741 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 EFCAB11Q9BUY7 163 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 ASPSCR1Q9BZE9 553 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 REXO4Q9GZR2 422 aaKnown RBP11.6□□□□□ -0.55
NUP54-202ENST00000502850 SGK2Q9HBY8 427 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 ITM2CQ9NQX7 267 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 TMEM9Q9P0T7 183 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 BTNL2Q9UIR0 455 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 DYRK1BQ9Y463 629 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 GMEB1Q9Y692 573 aa11.6□□□□□ -0.55
NUP54-202ENST00000502850 NOTCH4Q99466 2003 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 DENND4AQ7Z401 1863 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 KIAA1549LQ6ZVL6 1849 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 A0A1B0GTW7 788 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 E7EQ34 232 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 H3BSA7 217 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 KPNA3O00505 521 aaPredicted RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 SCAMP2O15127 329 aaKnown RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 RB1P06400 928 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 CA3P07451 260 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 CISD3P0C7P0 127 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 PCNAP12004 261 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 CEBPBP17676 345 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 TACR1P25103 407 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 IMPA1P29218 277 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 PHC1P78364 1004 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 VAC14Q08AM6 782 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 LAPTM5Q13571 262 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 VEZF1Q14119 521 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 HIST2H2ACQ16777 129 aaPredicted RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 GTDC1Q4AE62 458 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 BROXQ5VW32 411 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 HIST2H2AA3Q6FI13 130 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 OR4F3Q6IEY1 312 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 MED27Q6P2C8 311 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 DOK6Q6PKX4 331 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 TMEM220Q6QAJ8 160 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 GRASPQ7Z6J2 395 aaPredicted RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 NLRP8Q86W28 1048 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 PHACTR4Q8IZ21 702 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 OFCC1Q8IZS5 231 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 HDAC2Q92769 488 aaKnown RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 UBE2E3Q969T4 207 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 NUS1Q96E22 293 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 WDR34Q96EX3 536 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 COQ10AQ96MF6 247 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 INPP5KQ9BT40 448 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 COL25A1Q9BXS0 654 aaPredicted RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 GABARAPL1Q9H0R8 117 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 EHD1Q9H4M9 534 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 THG1LQ9NWX6 298 aaKnown RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 SIRT5Q9NXA8 310 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 MBD1Q9UIS9 605 aaPredicted RBP11.59□□□□□ -0.55
NUP54-202ENST00000502850 BAG5Q9UL15 447 aa11.59□□□□□ -0.55
NUP54-202ENST00000502850 A0A0C4DFX4 3053 aa11.58□□□□□ -0.55
NUP54-202ENST00000502850 MUC22E2RYF6 1773 aaPredicted RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 C17orf113A0A1B0GUU1 675 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 C5orf67F2Z3F1 127 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 CLIC1O00299 241 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 LRATO95237 230 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 GPX2P18283 190 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 CTSCP53634 463 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 CDH15P55291 814 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 TUBA3CQ13748 450 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 ELAVL3Q14576 367 aaKnown RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 CBX2Q14781 532 aaPredicted RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 UGT8Q16880 541 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 VMACQ2NL98 169 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 CPTPQ5TA50 214 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 SHQ1Q6PI26 577 aaKnown RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 TBPL2Q6SJ96 375 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 R3HCC1LQ7Z5L2 792 aaKnown RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 DSG4Q86SJ6 1040 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 CPA6Q8N4T0 437 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 SETD9Q8NE22 299 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 NUDT8Q8WV74 236 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 SORCS1Q8WY21 1168 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 LINC00615Q96LM1 132 aaPredicted RBP11.58□□□□□ -0.56
NUP54-202ENST00000502850 PHF12Q96QT6 1004 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 PKP4Q99569 1192 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 DUSP26Q9BV47 211 aa11.58□□□□□ -0.56
NUP54-202ENST00000502850 NPLQ9BXD5 320 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms