RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 GMPSP49915 693 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 MVDP53602 400 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 SELENOVP59797 346 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 RPL15P61313 204 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 POLR2GP62487 172 aaKnown RBP eCLIP3.98□□□□□ -1.77
VPS41-212ENST00000482217 HOXA4Q00056 320 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 GPR176Q14439 515 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 MVPQ14764 893 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 MAPRE2Q15555 327 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 SNCBQ16143 134 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 HKDC1Q2TB90 917 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 COL28A1Q2UY09 1125 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 AP5B1Q2VPB7 878 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 HNRNPA1L2Q32P51 320 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 TBRG1Q3YBR2 411 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 CBWD6Q4V339 395 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 FAM98BQ52LJ0 330 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 PDLIM3Q53GG5 364 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 ZNF789Q5FWF6 425 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 RNASE12Q5GAN4 147 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 CXorf66Q5JRM2 361 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 CBWD3Q5JTY5 395 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 ATF7IP2Q5U623 682 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 LRRC38Q5VT99 294 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 KRT39Q6A163 491 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 PTRHD1Q6GMV3 140 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 ACSM6Q6P461 480 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 FBXO46Q6PJ61 603 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 KIRREL2Q6UWL6 708 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 C17orf99Q6UX52 265 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 TMEM26Q6ZUK4 368 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 CYP4V2Q6ZWL3 525 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 NDUFAF7Q7L592 441 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 ADGRD2Q7Z7M1 963 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 KIAA1328Q86T90 577 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 FAM131BQ86XD5 332 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 MFN1Q8IWA4 741 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 AQP12AQ8IXF9 295 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 CENPLQ8N0S6 344 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 GPR137CQ8N3F9 429 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 TERB1Q8NA31 727 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 MINDY2Q8NBR6 621 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 MCUQ8NE86 351 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 MCPH1Q8NEM0 835 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 OR52L2PQ8NGH6 319 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 CD300LFQ8TDQ1 290 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 NSMAFQ92636 917 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 TOP1MTQ969P6 601 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 SPSB1Q96BD6 273 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 AP2M1Q96CW1 435 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 RPGRIP1Q96KN7 1286 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 LRR1Q96L50 414 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 TRNT1Q96Q11 434 aaKnown RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 ACBD6Q9BR61 282 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 RNF26Q9BY78 433 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 PARD6GQ9BYG4 376 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 CIPCQ9C0C6 399 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 SIRPDQ9H106 197 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 BLZF1Q9H2G9 400 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 RAD21L1Q9H4I0 556 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 PLEKHA4Q9H4M7 779 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 ANKZF1Q9H8Y5 726 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 CALHM2Q9HA72 323 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 SAP30LQ9HAJ7 183 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 PCDH9Q9HC56 1237 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 ZNF275Q9NSD4 429 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 MTMR10Q9NXD2 777 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 PLK2Q9NYY3 685 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 NCKIPSDQ9NZQ3 722 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 COPG2Q9UBF2 871 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 UBQLN2Q9UHD9 624 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 SLC24A2Q9UI40 661 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 FZD4Q9ULV1 537 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 TMEM184BQ9Y519 407 aaPredicted RBP3.98□□□□□ -1.77
VPS41-212ENST00000482217 USP16Q9Y5T5 823 aa3.98□□□□□ -1.77
VPS41-212ENST00000482217 CGNL1Q0VF96 1302 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 SPATA31A1Q5TZJ5 1347 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.97□□□□□ -1.77
VPS41-212ENST00000482217 A0A1B0GUL7 405 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 GOLGA8IPA6NC78 632 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 SDR42E2A6NKP2 422 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 BTBD19C9JJ37 291 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 PRR23D1E9PI22 279 aaPredicted RBP3.97□□□□□ -1.77
VPS41-212ENST00000482217 ABCD4O14678 606 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 CTDSPLO15194 276 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 EIF3HO15372 352 aaKnown RBP eCLIP3.97□□□□□ -1.77
VPS41-212ENST00000482217 NKX2-8O15522 239 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 AP5Z1O43299 807 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 HCRTR2O43614 444 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 SSX5O60225 188 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 ECE2O60344 883 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 HSF2BPO75031 334 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 CDC123O75794 336 aaPredicted RBP3.97□□□□□ -1.77
VPS41-212ENST00000482217 TOMM70O94826 608 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 RHOBTB1O94844 696 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 GLCEO94923 617 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 LCA5LO95447 670 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 MT-CO3P00414 261 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 LDLRP01130 860 aa3.97□□□□□ -1.77
VPS41-212ENST00000482217 PRR23D2P0DMB1 279 aaPredicted RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms