RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ZNF285Q96NJ3 590 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 SELENOSQ9BQE4 189 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 CAPS2Q9BXY5 557 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 ULBP3Q9BZM4 244 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 CD244Q9BZW8 370 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 SPRTNQ9H040 489 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-204ENST00000469054 DNAJC11Q9NVH1 559 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 IRAK4Q9NWZ3 460 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 GPRC5BQ9NZH0 403 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TMEM216Q9P0N5 145 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 CPSF2Q9P2I0 782 aaKnown RBP11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TMCO1Q9UM00 188 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 TMEM184BQ9Y519 407 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-204ENST00000469054 PCDHB3Q9Y5E6 796 aa11.45□□□□□ -0.58
VPS13D-204ENST00000469054 LOC105369274A0A096LPK9 316 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 LOC102723532A0A0G2JNH3 316 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 TK2O00142 265 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 HAT1O14929 419 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CCNT2O60583 730 aaKnown RBP11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CPNE3O75131 537 aaKnown RBP11.44□□□□□ -0.58
VPS13D-204ENST00000469054 GLRA3O75311 464 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 DLGAP3O95886 979 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 NTRK1P04629 796 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CTSBP07858 339 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 SBK3P0C264 359 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 LIPCP11150 499 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 KRT4P19013 534 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CRHR1P34998 444 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 GRK3P35626 688 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 AGTR2P50052 363 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CCR8P51685 355 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 ALDH18A1P54886 795 aaKnown RBP11.44□□□□□ -0.58
VPS13D-204ENST00000469054 SLC18A2Q05940 514 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CDC16Q13042 620 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 MAP7Q14244 749 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 SETDB1Q15047 1291 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 PCBP2Q15366 365 aaKnown RBP eCLIP11.44□□□□□ -0.58
VPS13D-204ENST00000469054 KRT71Q3SY84 523 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 TCTE1Q5JU00 501 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CATSPEREQ5SY80 951 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 FRMPD2BQ6IN97 320 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 C16orf46Q6P387 395 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 NXPE4Q6UWF7 544 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 LRRC70Q7Z2Q7 622 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 TIPARPQ7Z3E1 657 aaKnown RBP11.44□□□□□ -0.58
VPS13D-204ENST00000469054 PLD3Q8IV08 490 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 OR4N4Q8N0Y3 316 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF655Q8N720 491 aaPredicted RBP11.44□□□□□ -0.58
VPS13D-204ENST00000469054 KCNE4Q8WWG9 221 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 RNF31Q96EP0 1072 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CNTNAP3BQ96NU0 1288 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 ZIM3Q96PE6 472 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 OR2A5Q96R48 311 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 CNTNAP3Q9BZ76 1288 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 ENAMQ9NRM1 1142 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 RAXQ9Y2V3 346 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 ASB1Q9Y576 335 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 AP1M2Q9Y6Q5 423 aa11.44□□□□□ -0.58
VPS13D-204ENST00000469054 FEZF1A0PJY2 475 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 H0YGG7 62 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 STX16-NPEPL1H3BU86 382 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 K7EPI3 171 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 STX16O14662 325 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 ZSCAN9O15535 394 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 RRP8O43159 456 aaKnown RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 ZNF749O43361 778 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 RAD1O60671 282 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 SMIM24O75264 130 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 HBQ1P09105 142 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 GNAZP19086 355 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 EIF2S3P41091 472 aaKnown RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 VSX2P58304 361 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 ARF3P61204 181 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 RPS15AP62244 130 aaKnown RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 GRM7Q14831 915 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 PDK4Q16654 411 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 WASHC2DQ5SRD0 308 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 CEP85LQ5SZL2 805 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 C6orf15Q6UXA7 325 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 LRIG3Q6UXM1 1119 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 SLCO4C1Q6ZQN7 724 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 CROCCP2Q86T23 111 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 TMPRSS11BQ86T26 416 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 TRABD2AQ86V40 505 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 NLGN4XQ8N0W4 816 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 C4orf33Q8N1A6 199 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 ESX1Q8N693 406 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 PTGR2Q8N8N7 351 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 SNX31Q8N9S9 440 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 SLC38A9Q8NBW4 561 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 GALNT6Q8NCL4 622 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 NLGN4YQ8NFZ3 816 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 PHF21BQ96EK2 531 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 THAP11Q96EK4 314 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 NAF1Q96HR8 494 aaKnown RBP11.43□□□□□ -0.58
VPS13D-204ENST00000469054 LRFN5Q96NI6 719 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 AIF1LQ9BQI0 150 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 SARGQ9BW04 601 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 DPH1Q9BZG8 443 aa11.43□□□□□ -0.58
VPS13D-204ENST00000469054 SLC7A5P2Q9GIP4 190 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms