RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-209	ENST00000468872	FANCD2	Q9BXW9	1451 aa		4.6	□□□□□ -1.67
LSM5-209	ENST00000468872	PPRC1	Q5VV67	1664 aa	Known RBP	4.6	□□□□□ -1.67
LSM5-209	ENST00000468872	GOSR1	O95249	250 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	BAG3	O95817	575 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	STAG3L1	P0CL83	205 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	CSTF2	P33240	577 aa	Known RBP eCLIP	4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	SQLE	Q14534	574 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	P2RY6	Q15077	328 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	TAF13	Q15543	124 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	SLC25A53	Q5H9E4	307 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	SLC35D3	Q5M8T2	416 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	CCDC158	Q5M9N0	1113 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	SPOUT1	Q5T280	376 aa	Known RBP	4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	CASC4	Q6P4E1	433 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	PRSS55	Q6UWB4	352 aa	Predicted RBP	4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	TRPT1	Q86TN4	253 aa	Known RBP	4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	AMIGO1	Q86WK6	493 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	C4orf19	Q8IY42	314 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	KLHDC1	Q8N7A1	406 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	STPG4	Q8N801	248 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	NOA1	Q8NC60	698 aa	Known RBP	4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	OR7G3	Q8NG95	312 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	CTCFL	Q8NI51	663 aa	Predicted RBP	4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	AFAP1L1	Q8TED9	768 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	TEKT1	Q969V4	418 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	TMEM143	Q96AN5	459 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	GDAP1L1	Q96MZ0	367 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	PANK2	Q9BZ23	570 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	ACTL8	Q9H568	366 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	ABCB8	Q9NUT2	735 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	ADPRHL2	Q9NX46	363 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	CNIH4	Q9P003	139 aa		4.59	□□□□□ -1.67
LSM5-209	ENST00000468872	STRC	Q7RTU9	1775 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	KIAA1210	Q9ULL0	1709 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	IGHV4-61	A0A0C4DH41	118 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	FAM172BP	A6NC97	362 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	PRSS46	E5RG02	174 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872		F8VVB4	439 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872		F8VWA3	439 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872		O00370	1275 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	ZNF197	O14709	1029 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	LMX1B	O60663	402 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	NGF	P01138	241 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	IGHV4-59	P01825	116 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	C9	P02748	559 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	APOH	P02749	345 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	SP1	P08047	785 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	GP1BB	P13224	206 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	DARS	P14868	501 aa	Known RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	CCND3	P30281	292 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	CEACAM8	P31997	349 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	LINC01547	P58512	204 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	FOLH1	Q04609	750 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	GLRA4	Q5JXX5	417 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	SLC26A9	Q7LBE3	791 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	PIGZ	Q86VD9	579 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	CREBRF	Q8IUR6	639 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	NCOA7	Q8NI08	942 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	UBE2Q2	Q8WVN8	375 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	SGF29	Q96ES7	293 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	NDN	Q99608	321 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	HNRNPAB	Q99729	332 aa	Known RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	CPVL	Q9H3G5	476 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	SIX2	Q9NPC8	291 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	DNAJC17	Q9NVM6	304 aa	Known RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	CWC25	Q9NXE8	425 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	VPS18	Q9P253	973 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	TNN	Q9UQP3	1299 aa		4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	GREB1L	Q9C091	1923 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM5-209	ENST00000468872	C17orf105	B2RV13	164 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	SLC33A1	O00400	549 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ZNF263	O14978	683 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	CTDSPL	O15194	276 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	NME6	O75414	186 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	SLC22A3	O75751	556 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	SLC16A8	O95907	504 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ITIH1	P19827	911 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ALDH1B1	P30837	517 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ST8SIA6	P61647	398 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ASIC1	P78348	528 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	CACNG1	Q06432	222 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	SULT2A1	Q06520	285 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	TRAP1	Q12931	704 aa	Known RBP	4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	RBBP7	Q16576	425 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	GPR33	Q49SQ1	333 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	IQCC	Q4KMZ1	466 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	C20orf194	Q5TEA3	1177 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	STPG1	Q5TH74	334 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	PODNL1	Q6PEZ8	512 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	MARK2	Q7KZI7	788 aa	Known RBP	4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	PHLDB2	Q86SQ0	1253 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	AMER3	Q8N944	861 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	TSACC	Q96A04	125 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ZNF524	Q96C55	264 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	PGM2	Q96G03	612 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	AK8	Q96MA6	479 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	CDK19	Q9BWU1	502 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	CACNG6	Q9BXT2	260 aa		4.57	□□□□□ -1.68
LSM5-209	ENST00000468872	ZNF350	Q9GZX5	532 aa		4.57	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms