RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 EFEMP1Q12805 493 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 EIF4EBP2Q13542 120 aaPredicted RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 KRR1Q13601 381 aaKnown RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SSX1Q16384 188 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 BTBD16Q32M84 506 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 USP39Q53GS9 565 aaKnown RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 PXDC1Q5TGL8 231 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SLC5A8Q8N695 610 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SPERTQ8NA61 448 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 LPCAT1Q8NF37 534 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 B3GNT7Q8NFL0 401 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 PPP3R2Q96LZ3 170 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 VPS35Q96QK1 796 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 NIPSNAP1Q9BPW8 284 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 C1QTNF3Q9BXJ4 246 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SLA2Q9H6Q3 261 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 MALT1Q9UDY8 824 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 EFCAB10A6NFE3 127 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 GRXCR2A6NFK2 248 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 CDK2AP1O14519 115 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF780AO75290 641 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ERN1O75460 977 aaKnown RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 IL6P05231 212 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 POU3F3P20264 500 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 PTPN6P29350 595 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 MS4A13Q5J8X5 152 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 C10orf62Q5T681 223 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ATG9BQ674R7 924 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 OVOS1Q6IE37 1185 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 FBXL22Q6P050 247 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF621Q6ZSS3 439 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF598Q86UK7 904 aaKnown RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 IQCF2Q8IXL9 164 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 PLPP6Q8IY26 295 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 CLDN19Q8N6F1 224 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 KLHDC9Q8NEP7 349 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 OR9Q2Q8NGE9 314 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 LKAAEAR1Q8TD35 194 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 MGLLQ99685 303 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ASPNQ9BXN1 380 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ABCB9Q9NP78 766 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 PCDH10Q9P2E7 1040 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 HSPE1-MOB4S4R3N1 261 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 RFXANKO14593 260 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 FFAR2O15552 330 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 RGS14O43566 566 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ULK1O75385 1050 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 CLEC2LP0C7M8 214 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF140P52738 457 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 HYAL2Q12891 473 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 KLHL17Q6TDP4 642 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 GLRX5Q86SX6 157 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 CCDC28AQ8IWP9 274 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 CLECL1Q8IZS7 167 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 DEDD2Q8WXF8 326 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 MYDGFQ969H8 173 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 RPRD1AQ96P16 312 aaPredicted RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 NPAP1Q9NZP6 1156 aa11.35□□□□□ -0.59
CPSF3-202ENST00000460593 SAMD4AQ9UPU9 718 aaKnown RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 CFAP20Q9Y6A4 193 aaKnown RBP11.35□□□□□ -0.59
CPSF3-202ENST00000460593 FGF1P05230 155 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ITGA2P17301 1181 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SMPD1P17405 629 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ENGP17813 658 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 DDX5P17844 614 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 MYL9P24844 172 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 LHX1P48742 406 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 NFE2L1Q14494 772 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 DUSP7Q16829 419 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SBSNQ6UWP8 590 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 TMPRSS11AQ6ZMR5 421 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 DPY19L3Q6ZPD9 716 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 FAM124AQ86V42 546 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 TMEM132CQ8N3T6 1108 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 FAM109AQ8N4B1 249 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 NLGN4YQ8NFZ3 816 aaPredicted RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 WDR36Q8NI36 951 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 GTPBP3Q969Y2 492 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 TMCO6Q96DC7 493 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 HRASLS5Q96KN8 279 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 PPP1R2P1Q96PQ5 205 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 GFM1Q96RP9 751 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SPON2Q9BUD6 331 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 HDHD5Q9BXW7 423 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 POLR1EQ9GZS1 481 aaKnown RBP11.34□□□□□ -0.59
CPSF3-202ENST00000460593 STMN3Q9NZ72 180 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ERVW-1Q9UQF0 538 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CLCA3PQ9Y6N3 262 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CCDC182A6NF36 153 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 A8MUA0 341 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 B3GAT3O94766 335 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 CCNDBP1O95273 360 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 OTCP00480 354 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 POMCP01189 267 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 ESR1P03372 595 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SMIM10L2AP0DMW4 78 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 SMIM10L2BP0DMW5 78 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 POU1F1P28069 291 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 OR1E1P30953 314 aa11.34□□□□□ -0.59
CPSF3-202ENST00000460593 KDELR2P33947 212 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms