RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MAT1AQ00266 395 aaKnown RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 GPS1Q13098 491 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 THOC5Q13769 683 aaKnown RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 DSG2Q14126 1118 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 GBX1Q14549 363 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 SYT16Q17RD7 645 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 PRTGQ2VWP7 1150 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 C1QL3Q5VWW1 255 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 ICE2Q659A1 982 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 FBXO42Q6P3S6 717 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 DRICH1Q6PGQ1 229 aaPredicted RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 MYO7BQ6PIF6 2116 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 NDUFAF7Q7L592 441 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 PAQR7Q86WK9 346 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 PLD3Q8IV08 490 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 BARD1Q99728 777 aaKnown RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 SYNPO2LQ9H987 977 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 FBXO6Q9NRD1 293 aaPredicted RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 SCN2AQ99250 2005 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 MYO9AB2RTY4 2548 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 IGKV1-8A0A0C4DH67 115 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 GOLGA8MH3BSY2 632 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 MYO1CO00159 1063 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 HAT1O14929 419 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 P2RX6O15547 441 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 PHF2O75151 1096 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 AVILO75366 819 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 PSIP1O75475 530 aaKnown RBP13.79□□□□□ -0.2
SDC1-204ENST00000429035 JRKO75564 520 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 WFS1O76024 890 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 SLC16A8O95907 504 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 ERGP11308 486 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 KCNK10P57789 538 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 CDK16Q00536 496 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 DHX34Q14147 1143 aaKnown RBP13.79□□□□□ -0.2
SDC1-204ENST00000429035 NEPROQ6NW34 567 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 CILP2Q8IUL8 1156 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 REXO1L1PQ8IX06 675 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 MVB12AQ96EY5 273 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 LMF1Q96S06 567 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 TCF12Q99081 682 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 SLC30A3Q99726 388 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 DRC3Q9H069 523 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 VPS9D1Q9Y2B5 631 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 ZKSCAN5Q9Y2L8 839 aa13.79□□□□□ -0.2
SDC1-204ENST00000429035 IGLV3-12A0A075B6K2 115 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 IGHV1-45A0A0A0MS14 117 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 TRAV17A0A0B4J275 112 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 EZRP15311 586 aaKnown RBP13.78□□□□□ -0.2
SDC1-204ENST00000429035 FDXRP22570 491 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 SRSF11Q05519 484 aaKnown RBP13.78□□□□□ -0.2
SDC1-204ENST00000429035 ARHGAP19Q14CB8 494 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 NDUFA9Q16795 377 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 MINDY4Q4G0A6 757 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 ANKRD22Q5VYY1 191 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 ATG9BQ674R7 924 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 HIBCHQ6NVY1 386 aaPredicted RBP13.78□□□□□ -0.2
SDC1-204ENST00000429035 CENPUQ71F23 418 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 DENND6AQ8IWF6 608 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 ZC3H7AQ8IWR0 971 aaKnown RBP13.78□□□□□ -0.2
SDC1-204ENST00000429035 AMER3Q8N944 861 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 GIMAP7Q8NHV1 300 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 ZCCHC10Q8TBK6 192 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 ZNF480Q8WV37 535 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 MKKSQ9NPJ1 570 aaPredicted RBP13.78□□□□□ -0.2
SDC1-204ENST00000429035 ENAMQ9NRM1 1142 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 INTS10Q9NVR2 710 aaKnown RBP13.78□□□□□ -0.2
SDC1-204ENST00000429035 SH3BGRL2Q9UJC5 107 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 MKL2Q9ULH7 1088 aa13.78□□□□□ -0.2
SDC1-204ENST00000429035 ENO4A6NNW6 628 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 PRSS44E7EML9 344 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 BMP10O95393 424 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 KRT14P02533 472 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 SERPINA7P05543 415 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 CCDC175P0C221 793 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 ITGAMP11215 1152 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 SOX11P35716 441 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 HSD17B2P37059 387 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 AVPR1BP47901 424 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 CLCN7P51798 805 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 ADARP55265 1226 aaKnown RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 PRDX1Q06830 199 aaKnown RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 CTBP1Q13363 440 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 NAA30Q147X3 362 aaPredicted RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 ZRSR2Q15696 482 aaKnown RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 GARNL3Q5VVW2 1013 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 ZNF425Q6IV72 752 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 GFRALQ6UXV0 394 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 NEK10Q6ZWH5 1172 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 SRRM1Q8IYB3 904 aaKnown RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 CPNE9Q8IYJ1 553 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 AMER2Q8N7J2 671 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 SUN3Q8TAQ9 357 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 ALKBH8Q96BT7 664 aaKnown RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 OR2A5Q96R48 311 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 SLX1AQ9BQ83 275 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 MRPS2Q9Y399 296 aaKnown RBP13.77□□□□□ -0.21
SDC1-204ENST00000429035 MAD1L1Q9Y6D9 718 aa13.77□□□□□ -0.21
SDC1-204ENST00000429035 TRGV8A0A0C4DH27 118 aa13.76□□□□□ -0.21
SDC1-204ENST00000429035 IGHV3-20A0A0C4DH32 117 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms