RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ASAH1Q13510 395 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 SSX1Q16384 188 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 TSTQ16762 297 aaKnown RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 VMACQ2NL98 169 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 LAX1Q8IWV1 398 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ZZZ3Q8IYH5 903 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 COQ8BQ96D53 544 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 C7orf34Q96L11 122 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 WDFY2Q96P53 400 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 TAPBPLQ9BX59 468 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 SLC22A4Q9H015 551 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 NMUR1Q9HB89 426 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ELOVL2Q9NXB9 296 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 GPRC5BQ9NZH0 403 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 RGS17Q9UGC6 210 aaPredicted RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 MEIS3P2A8K0S8 358 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 B8ZZF3 427 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SHOXO15266 292 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 RGS5O15539 181 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 FFAR2O15552 330 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 KCNK5O95279 499 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 APBA3O96018 575 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 RPS19P39019 145 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 CLCN7P51798 805 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CLDN8P56748 225 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 RPS14P62263 151 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 BNC1Q01954 994 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TAB1Q15750 504 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 MS4A13Q5J8X5 152 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SYCE2Q6PIF2 218 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TMPRSS11AQ6ZMR5 421 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 VWA5B2Q8N398 1253 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 MDGA1Q8NFP4 955 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 OR4M1Q8NGD0 313 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 MGLLQ99685 303 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TSEN34Q9BSV6 310 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 NSUN3Q9H649 340 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 SARS2Q9NP81 518 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 ABCB8Q9NUT2 735 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TMEM184CQ9NVA4 438 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 PPT2Q9UMR5 302 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 VPS9D1Q9Y2B5 631 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 DLGAP4Q9Y2H0 992 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 ZNF451Q9Y4E5 1061 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CFAP20Q9Y6A4 193 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 PATJQ8NI35 1801 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 LINC00854A0A1B0GVQ3 168 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 EFCAB10A6NFE3 127 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 MOXD2PA6NHM9 499 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 OR6C70A6NIJ9 312 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 IQCF5A8MTL0 148 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 ULK1O75385 1050 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 MYL9P24844 172 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 AFF1P51825 1210 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 PSPHP78330 225 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TNK1Q13470 666 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 IDO2Q6ZQW0 420 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CCDC149Q6ZUS6 474 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 GLRX5Q86SX6 157 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 PTOV1Q86YD1 416 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 FAM181AQ8N9Y4 354 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 REPS1Q96D71 796 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SLC39A13Q96H72 371 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 PKMYT1Q99640 499 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CDCA4Q9BXL8 241 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TIGARQ9NQ88 270 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CPA4Q9UI42 421 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SNX7Q9UNH6 387 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 PCDHGA2Q9Y5H1 932 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 IGLV3-10A0A075B6K4 115 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SMIM35A0A1B0GVV1 85 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 A0A1W2PQ72 361 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CCDC182A6NF36 153 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 RRN3P2A6NIE6 340 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 NT5C1B-RDH14C9J2C7 533 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CDK2AP1O14519 115 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TEX28O15482 410 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SEC14L5O43304 696 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 WDR47O94967 919 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 MMP3P08254 477 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 IDH2P48735 452 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 TTPAP49638 278 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 GZMKP49863 264 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 CLCN4P51793 760 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SCN1BQ07699 218 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SERINC3Q13530 473 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 TAF1AQ15573 450 aaPredicted RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 C5orf22Q49AR2 442 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SGO1Q5FBB7 561 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 PDE12Q6L8Q7 609 aaKnown RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 GLT6D1Q7Z4J2 308 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 ZNF605Q86T29 641 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 PLCZ1Q86YW0 608 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 LSMEM1Q8N8F7 131 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 DENND6BQ8NEG7 585 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 C9orf43Q8TAL5 461 aaPredicted RBP10.37□□□□□ -0.75
USP54-204ENST00000422491 USP7Q93009 1102 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 SERPINB11Q96P15 392 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 HHIPQ96QV1 700 aa10.37□□□□□ -0.75
USP54-204ENST00000422491 FEVQ99581 238 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms