RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NDUFS1P28331 727 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 FASLGP48023 281 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 CLNS1AP54105 237 aaKnown RBP12.97□□□□□ -0.33
LIMS1-204ENST00000409441 PKNOX1P55347 436 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 HHEXQ03014 270 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 NR0B2Q15466 257 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 GSTA3Q16772 222 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 PPP1R3AQ16821 1122 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 PROX2Q3B8N5 592 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 REP15Q6BDI9 236 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 ZFP1Q6P2D0 407 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 TTC23LQ6PF05 361 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 RASGRP3Q8IV61 690 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 NAXDQ8IW45 347 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 HOMEZQ8IX15 550 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 AVL9Q8NBF6 648 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 HMGCLL1Q8TB92 370 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 ZFPM2Q8WW38 1151 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 CAMK1GQ96NX5 476 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 ZNF184Q99676 751 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-204ENST00000409441 AKTIPQ9H8T0 292 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 PARVBQ9HBI1 364 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 POT1Q9NUX5 634 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 LRIT1Q9P2V4 623 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 POLG2Q9UHN1 485 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 TDRKHQ9Y2W6 561 aaKnown RBP12.97□□□□□ -0.33
LIMS1-204ENST00000409441 TNPO3Q9Y5L0 923 aaKnown RBP12.97□□□□□ -0.33
LIMS1-204ENST00000409441 ARHGEF17Q96PE2 2063 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-204ENST00000409441 LY6G6EA0A0G2JKS1 128 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 ARHGEF33A8MVX0 844 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 PIP5K1BO14986 540 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 ESRRBO95718 433 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 LDOC1O95751 146 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-204ENST00000409441 BAG2O95816 211 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 CHEK2O96017 543 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 GLB1P16278 677 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 GPX3P22352 226 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 BDKRB1P46663 353 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 PSME3P61289 254 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 MMEL1Q495T6 779 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 CCSMST1Q4G0I0 132 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-204ENST00000409441 OGFOD2Q6N063 350 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 SPATA19Q7Z5L4 167 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 MCOLN3Q8TDD5 553 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 RAD51AP1Q96B01 352 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 SH3KBP1Q96B97 665 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 C3orf30Q96M34 536 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 NSUN5Q96P11 429 aaKnown RBP12.96□□□□□ -0.33
LIMS1-204ENST00000409441 ZNF382Q96SR6 550 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 NPAS2Q99743 824 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 CD274Q9NZQ7 290 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 PDE10AQ9Y233 779 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 RNF215Q9Y6U7 377 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 U3KQA8 63 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 DNAH14Q0VDD8 3507 aa12.96□□□□□ -0.33
LIMS1-204ENST00000409441 ARID1BQ8NFD5 2236 aaPredicted RBP12.96□□□□□ -0.34
LIMS1-204ENST00000409441 ZNF292O60281 2723 aa12.96□□□□□ -0.34
LIMS1-204ENST00000409441 CPED1A4D0V7 1026 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 RHPN2P1A8MT19 583 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 GIPC1O14908 333 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 NUDT21O43809 227 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 NRP2O60462 931 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 SORBS2O94875 1100 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 S100BP04271 92 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 ALDOCP09972 364 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 HIST1H2AGP0C0S8 130 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CKMT1AP12532 417 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 HIST1H2ADP20671 130 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 LIMK1P53667 647 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 SP140Q13342 867 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 GPR18Q14330 331 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PCBP2Q15366 365 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TGFBIQ15582 683 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PHKG1Q16816 387 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 SBSNQ6UWP8 590 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TMEM26Q6ZUK4 368 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 DCUN1D3Q8IWE4 304 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 DDIASQ8IXT1 998 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 RBM12BQ8IXT5 1001 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 MIER2Q8N344 545 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PCYOX1LQ8NBM8 494 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 FBXO15Q8NCQ5 510 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 OR6C4Q8NGE1 309 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TSPEARQ8WU66 669 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 PYDC1Q8WXC3 89 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 ROPN1LQ96C74 230 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 HIST1H2AHQ96KK5 128 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CNDP2Q96KP4 475 aaKnown RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 HIST1H2AJQ99878 128 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 H2AFJQ9BTM1 129 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 HGH1Q9BTY7 390 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TRIM54Q9BYV2 358 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 KIR3DX1Q9H7L2 352 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 SEMA4BQ9NPR2 832 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 TMEM45AQ9NWC5 275 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 CCDC167Q9P0B6 97 aa12.95□□□□□ -0.34
LIMS1-204ENST00000409441 C6orf203Q9P0P8 240 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-204ENST00000409441 SUCOQ9UBS9 1254 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms