RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 BRINP2Q9C0B6 783 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 LRTM1Q9HBL6 345 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 PRM3Q9NNZ6 103 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 C1orf109Q9NX04 203 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 ASIC5Q9NY37 505 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 TMED5Q9Y3A6 229 aa17.58■□□□□ 0.41
CCDC88C-203ENST00000389856 TCRBV3S1A0A5B6 114 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 H0Y8X5 98 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 NPPAP01160 153 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 MTHFD1P11586 935 aaKnown RBP17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC2A4P14672 509 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 PRPH2P23942 346 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 CD27P26842 260 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 RAB28P51157 221 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 E2F2Q14209 437 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 PAOXQ6QHF9 649 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 RD3Q7Z3Z2 195 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 HID1Q8IV36 788 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 LRRC56Q8IYG6 542 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 SFRP1Q8N474 314 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 OR2T11Q8NH01 316 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 KLHDC7BQ96G42 594 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 GSDMCQ9BYG8 508 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 BRF2Q9HAW0 419 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 ABCD2Q9UBJ2 740 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 CIDEBQ9UHD4 219 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 PCOLCE2Q9UKZ9 415 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 CA5BQ9Y2D0 317 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 GPR45Q9Y5Y3 372 aa17.58■□□□□ 0.4
CCDC88C-203ENST00000389856 XIRP2A4UGR9 3374 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 NPIPB8E9PQR5 432 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 PDYNP01213 254 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 THEGLP0DJG4 465 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 C1GALT1C1LP0DN25 315 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 HSD17B1P14061 328 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 ACPPP15309 386 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 NPPBP16860 134 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC7A1P30825 629 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 AQP4P55087 323 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 PRKG2Q13237 762 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 RPE65Q16518 533 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 ALG11Q2TAA5 492 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 USP39Q53GS9 565 aaKnown RBP17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 MED27Q6P2C8 311 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 BLOC1S3Q6QNY0 202 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 SLCO4C1Q6ZQN7 724 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 PRR23BQ6ZRT6 265 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 TMPRSS11BQ86T26 416 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 C17orf64Q86WR6 236 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 ZFAND4Q86XD8 727 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 ST13P4Q8IZP2 240 aaPredicted RBP17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 KRT78Q8N1N4 520 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 MARVELD2Q8N4S9 558 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 OR13H1Q8NG92 308 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 CMTM7Q96FZ5 175 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 CAMK1GQ96NX5 476 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 OR4K3Q96R72 315 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 ZBTB18Q99592 522 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 AASDHPPTQ9NRN7 309 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 WDR37Q9Y2I8 494 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 AP4S1Q9Y587 144 aa17.57■□□□□ 0.4
CCDC88C-203ENST00000389856 KRT87PA6NCN2 255 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 METTL12A8MUP2 240 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 SEC22BO75396 215 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC22A3O75751 556 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 LINGO3P0C6S8 592 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 ACTR1BP42025 376 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 KCNK10P57789 538 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 ACTR1AP61163 376 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 RPL38P63173 70 aaKnown RBP17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 NXPE4Q6UWF7 544 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 IQCHQ86VS3 1027 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 PHACTR4Q8IZ21 702 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 NEIL2Q969S2 332 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 TSACCQ96A04 125 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 PITHD1Q9GZP4 211 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 KIR3DX1Q9H7L2 352 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 PELI2Q9HAT8 420 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 C2orf42Q9NWW7 574 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 ADGRE2Q9UHX3 823 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 CCL27Q9Y4X3 112 aa17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 CFAP20Q9Y6A4 193 aaKnown RBP17.56■□□□□ 0.4
CCDC88C-203ENST00000389856 SPTY2D1-AS1A0A0U1RR47 76 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 AQP12BA6NM10 295 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 NR5A2O00482 541 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 AXIN1O15169 862 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 MYO1DO94832 1006 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 CCNDBP1O95273 360 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 SERPINB1P30740 379 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 MTAPQ13126 283 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 MAMSTRQ6ZN01 415 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 DHFR2Q86XF0 187 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 AQP12AQ8IXF9 295 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 OR2L8Q8NGY9 312 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 ZFPM2Q8WW38 1151 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 RLN3Q8WXF3 142 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 CXorf40BQ96DE9 158 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 PRDM8Q9NQV8 689 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 GPR27Q9NS67 375 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 GIMAP2Q9UG22 337 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms