RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 KCNJ9Q92806 393 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 FATE1Q969F0 183 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 DMRTB1Q96MA1 342 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 KCNC2Q96PR1 638 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MAPKAP1Q9BPZ7 522 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MARCH7Q9H992 704 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PLEKHA1Q9HB21 404 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MKKSQ9NPJ1 570 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 AASSQ9UDR5 926 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 E7ESA3 106 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PDCD5O14737 125 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MTX2O75431 263 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 GDF5P43026 501 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ARCN1P48444 511 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 NUDT6P53370 316 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TXNL4AP83876 142 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TGFBIQ15582 683 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF829Q3KNS6 432 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TUBA3EQ6PEY2 450 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 STX12Q86Y82 276 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 RGMAQ96B86 450 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 AURKBQ96GD4 344 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 GAL3ST4Q96RP7 486 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 RIOK2Q9BVS4 552 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ITPAQ9BY32 194 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 FARSBQ9NSD9 589 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 KCTD3Q9Y597 815 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 HEBP2Q9Y5Z4 205 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 A0A1W2PRU2 124 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 J3QRK9 145 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MANBAO00462 879 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 LSM1O15116 133 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 UBXN7O94888 489 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 DBIP07108 87 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ACADLP28330 430 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ACSL1P33121 698 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 GBX2P52951 348 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 VBP1P61758 197 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PPIGQ13427 754 aaKnown RBP eCLIP11.13□□□□□ -0.632e-7■■□□□ 12.2
PTPRF-203ENST00000372407 TUBA3CQ13748 450 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 LRRC32Q14392 662 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TPRG1LQ5T0D9 272 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 XKR5Q6UX68 686 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PAMR1Q6UXH9 720 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ADGRD2Q7Z7M1 963 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PLD6Q8N2A8 252 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 C2CD4AQ8NCU7 369 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 C12orf43Q96C57 262 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 FBXL8Q96CD0 374 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 C11orf49Q9H6J7 331 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 BAIAP2Q9UQB8 552 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 A0A1W2PPW3 197 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 LINGO3P0C6S8 592 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 PSKH1P11801 424 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MAT2AP31153 395 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SLC13A2Q13183 592 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MOGQ16653 247 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 QSOX2Q6ZRP7 698 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 C1orf216Q8TAB5 229 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SMPDL3AQ92484 453 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 CMTM7Q96FZ5 175 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF641Q96N77 438 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MNTQ99583 582 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 PRRG4Q9BZD6 226 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MED31Q9Y3C7 131 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MARF1Q9Y4F3 1742 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 DCLK1O15075 740 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 HTRA2O43464 458 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 TLX3O43711 291 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 CLDN7O95471 211 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 AGR2O95994 175 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 PEPDP12955 493 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ACTR1BP42025 376 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ACTR1AP61163 376 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MOGSQ13724 837 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 GOLGA7Q7Z5G4 137 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SIAH1Q8IUQ4 282 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SLITRK4Q8IW52 837 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 TXNDC5Q8NBS9 432 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ATP6V1C2Q8NEY4 427 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 TSGA13Q96PP4 275 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 GPR88Q9GZN0 384 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 GPN3Q9UHW5 284 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 PCDHGB1Q9Y5G3 927 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MYH14Q7Z406 1995 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ABCB7O75027 752 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 TRIM3O75382 744 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SLC2A2P11168 524 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 KCNA5P22460 613 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ATP4BP51164 291 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 CLCN7P51798 805 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SMSP52788 366 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ARSFP54793 590 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 RBBP4Q09028 425 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF630Q2M218 657 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SMYD5Q6GMV2 418 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SLC8B1Q6J4K2 584 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF773Q6PK81 442 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 GPALPP1Q8IXQ4 340 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 NXPE1Q8N323 547 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms