RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PRPS2P11908 318 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 ACPPP15309 386 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 HTR1BP28222 390 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 HSD17B2P37059 387 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 CLDN8P56748 225 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 YPEL5P62699 121 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 PHC1P78364 1004 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 RAE1P78406 368 aaKnown RBP13.28□□□□□ -0.28
PTPRF-202ENST00000372405 ZP2Q05996 745 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 NFYCQ13952 458 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 LRRC32Q14392 662 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 RNF111Q6ZNA4 994 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 VN1R5Q7Z5H4 357 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 DEFB123Q8N688 67 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 PYDC1Q8WXC3 89 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 SMPDL3AQ92484 453 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 HAUS8Q9BT25 410 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 PCDHAC1Q9H158 963 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 GID8Q9NWU2 228 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 SUCOQ9UBS9 1254 aaKnown RBP13.28□□□□□ -0.28
PTPRF-202ENST00000372405 WNT16Q9UBV4 365 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 PPT2Q9UMR5 302 aa13.28□□□□□ -0.28
PTPRF-202ENST00000372405 PRAMEF26H0Y7S4 382 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 BCAS2O75934 225 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-202ENST00000372405 MTHFD1P11586 935 aaKnown RBP13.27□□□□□ -0.28
PTPRF-202ENST00000372405 CD6P30203 668 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 PKLRP30613 574 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 ATXN3P54252 364 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-202ENST00000372405 SRP54P61011 504 aaKnown RBP13.27□□□□□ -0.28
PTPRF-202ENST00000372405 FOXM1Q08050 763 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 RABL3Q5HYI8 236 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 SAMD4BQ5PRF9 694 aaKnown RBP13.27□□□□□ -0.28
PTPRF-202ENST00000372405 C6orf10Q5SRN2 563 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 ADHFE1Q8IWW8 467 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 RIMKLAQ8IXN7 391 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 GLB1L3Q8NCI6 653 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-202ENST00000372405 OR52E1Q8NGJ3 308 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 DNAJB14Q8TBM8 379 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 SLC26A7Q8TE54 656 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 NRG4Q8WWG1 115 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 TMEM125Q96AQ2 219 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 ASB9Q96DX5 294 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 TMEM74Q96NL1 305 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 S100A14Q9HCY8 104 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 DMRT3Q9NQL9 472 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 ICKQ9UPZ9 632 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 KNL1Q8NG31 2342 aa13.27□□□□□ -0.28
PTPRF-202ENST00000372405 IGHV1OR15-9A0A0B4J2B8 117 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 A6NCN8 305 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 FOXE1O00358 373 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-202ENST00000372405 PGRP06401 933 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 RAB28P51157 221 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 FLOT2Q14254 428 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 TRIM25Q14258 630 aaKnown RBP13.27□□□□□ -0.29
PTPRF-202ENST00000372405 CCDC6Q16204 474 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 PAGE2BQ5JRK9 111 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 ABRAXAS1Q6UWZ7 409 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 C17orf64Q86WR6 236 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 NRROSQ86YC3 692 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 SIX5Q8N196 739 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 C1orf52Q8N6N3 182 aaKnown RBP13.27□□□□□ -0.29
PTPRF-202ENST00000372405 CHTF18Q8WVB6 975 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 SLC13A3Q8WWT9 602 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 JADE3Q92613 823 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 GTF2H4Q92759 462 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 ZBTB18Q99592 522 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 MVB12BQ9H7P6 319 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 WASH6PQ9NQA3 447 aa13.27□□□□□ -0.29
PTPRF-202ENST00000372405 MRPS17Q9Y2R5 130 aaKnown RBP13.27□□□□□ -0.29
PTPRF-202ENST00000372405 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-202ENST00000372405 IGKV1-8A0A0C4DH67 115 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 H3BNX3 289 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 DNAJA2O60884 412 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 FKBP6O75344 327 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 LRATO95237 230 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 RASGRP1O95267 797 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 TBX6O95947 436 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 B3GALT4O96024 378 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 MAPK1P28482 360 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 PTDSS1P48651 473 aaKnown RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 PXNP49023 591 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 SESN3P58005 492 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 PLIN5Q00G26 463 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 PUS10Q3MIT2 529 aaKnown RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 NANOGP8Q6NSW7 305 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 PRMT9Q6P2P2 845 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 SLC30A9Q6PML9 568 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 WASH2PQ6VEQ5 465 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 ARMCX6Q7L4S7 300 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 DHDDSQ86SQ9 333 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 BHLHE22Q8NFJ8 381 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 ABHD11Q8NFV4 315 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 OR2A1Q8NGT9 310 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 OR2L8Q8NGY9 312 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 REPS1Q96D71 796 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 TCEAL2Q9H3H9 227 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 NANOGQ9H9S0 305 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 GPR27Q9NS67 375 aa13.26□□□□□ -0.29
PTPRF-202ENST00000372405 ZNF624Q9P2J8 865 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-202ENST00000372405 KLF15Q9UIH9 416 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms