RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CRYBA2P53672 197 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 AP2S1P53680 142 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 IL2P60568 153 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 FAM189BP81408 668 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ASAH1Q13510 395 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 PCBP2Q15366 365 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS39-202ENST00000348544 TRIM60Q495X7 471 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 C5orf22Q49AR2 442 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 USP39Q53GS9 565 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 SGO1Q5FBB7 561 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TOR2AQ5JU69 321 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CACHD1Q5VU97 1274 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 FAM205BPQ63HN1 556 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 SDE2Q6IQ49 451 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 KIAA1841Q6NSI8 718 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 PSAPL1Q6NUJ1 521 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TMPRSS11AQ6ZMR5 421 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TSEN54Q7Z6J9 526 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 SLC51BQ86UW2 128 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 RNF130Q86XS8 419 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 MICALL2Q8IY33 904 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ZZZ3Q8IYH5 903 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ZNF683Q8IZ20 524 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TCTE3Q8IZS6 198 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 VWA5B2Q8N398 1253 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 STX19Q8N4C7 294 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ESX1Q8N693 406 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ZNF557Q8N988 423 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 C3orf58Q8NDZ4 430 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 NLGN4YQ8NFZ3 816 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 MGLLQ99685 303 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 RTP3Q9BQQ7 232 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TAPBPLQ9BX59 468 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 REEP1Q9H902 201 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 DYRK4Q9NR20 520 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 AASDHPPTQ9NRN7 309 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ELOVL2Q9NXB9 296 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 PPT2Q9UMR5 302 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 AP3M1Q9Y2T2 418 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CCDC182A6NF36 153 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 IQCF5A8MTL0 148 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 SMLR1H3BR10 107 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 HAX1O00165 279 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TAPBPO15533 448 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 VPS26AO75436 327 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 ESR1P03372 595 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FGF1P05230 155 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 CSF3P09919 207 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PKMP14618 531 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 DARSP14868 501 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 POLR2CP19387 275 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 ERP29P30040 261 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 IDH2P48735 452 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 HSPA7P48741 367 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PRIM2P49643 509 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 AFF1P51825 1210 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 MLLT6P55198 1093 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 PSPHP78330 225 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 DAB2P98082 770 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TNK1Q13470 666 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 MED22Q15528 200 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 BTBD16Q32M84 506 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TTLL9Q3SXZ7 439 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 GLYR1Q49A26 553 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 INO80DQ53TQ3 878 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 ESCO2Q56NI9 601 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TOR1AIP1Q5JTV8 583 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PDE12Q6L8Q7 609 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 SBSNQ6UWP8 590 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 ZNF367Q7RTV3 350 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 GLCCI1Q86VQ1 547 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PTOV1Q86YD1 416 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FAM217AQ8IXS0 508 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 RGL4Q8IZJ4 473 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 UBE2J2Q8N2K1 259 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TMEM132CQ8N3T6 1108 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FAM181AQ8N9Y4 354 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 B3GNT7Q8NFL0 401 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 OR4K2Q8NGD2 314 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 OR10T2Q8NGX3 314 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 C7orf34Q96L11 122 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 DPH2Q9BQC3 489 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 CNPPD1Q9BV87 410 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TTLL2Q9BWV7 592 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 ASPNQ9BXN1 380 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 HDHD5Q9BXW7 423 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 SLC22A4Q9H015 551 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 NSUN3Q9H649 340 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 RNF121Q9H920 327 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 C12orf10Q9HB07 376 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 LRTM1Q9HBL6 345 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 SARS2Q9NP81 518 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 PRDM5Q9NQX1 630 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 OLA1Q9NTK5 396 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 TMLHEQ9NVH6 421 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 RLIMQ9NVW2 624 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 NLE1Q9NVX2 485 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 NUDT4Q9NZJ9 180 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TRMT6Q9UJA5 497 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 SNX7Q9UNH6 387 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms