RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMCO6Q96DC7 493 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 HSH2DQ96JZ2 352 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM220BPB1ANY3 271 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 GPR182O15218 404 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 CNMDO75829 334 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 ETV3P41162 512 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 POU6F2P78424 691 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 DMC1Q14565 340 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 AMIGO1Q86WK6 493 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 PLPP6Q8IY26 295 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 GPR150Q8NGU9 434 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 CD200R1Q8TD46 325 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 HASPINQ8TF76 798 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 HDHD5Q9BXW7 423 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 REEP1Q9H902 201 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 NMUR1Q9HB89 426 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 POPDC3Q9HBV1 291 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 NMRK2Q9NPI5 230 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 PCDH10Q9P2E7 1040 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 UBA2Q9UBT2 640 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 TRMT6Q9UJA5 497 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 OGDHLQ9ULD0 1010 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 IPPQ9Y573 584 aa13.05□□□□□ -0.32
CCDC88C-201ENST00000331194 EFCAB10A6NFE3 127 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 E5RI56 91 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 H3BUI4 141 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 UGT2B17O75795 530 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CELF2O95319 508 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CYP2A6P11509 494 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 MYL9P24844 172 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ETV6P41212 452 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SOX3P41225 446 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CASP9P55211 416 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 IL2P60568 153 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 FAPQ12884 760 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 BTBD16Q32M84 506 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CTSL3PQ5NE16 218 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SDHAF4Q5VUM1 108 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ATG9BQ674R7 924 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CAMKK1Q8N5S9 505 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 FCGR1BQ92637 280 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 MYDGFQ969H8 173 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 HRASLS5Q96KN8 279 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 RIPOR3Q96MK2 946 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 FEVQ99581 238 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CCM2Q9BSQ5 444 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CLMPQ9H6B4 373 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ATP13A2Q9NQ11 1180 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 MS4A12Q9NXJ0 267 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ZNF226Q9NYT6 803 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 KCNN3Q9UGI6 736 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 PCDHGB2Q9Y5G2 931 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 TRAV19A0A0A6YYK7 116 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 A0A0G2JLL6 359 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 B4DXG7 233 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ERN1O75460 977 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 IGLV3-25P01717 112 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 BCKDHAP12694 445 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ACVR1Q04771 509 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SSX1Q16384 188 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CYP27C1Q4G0S4 372 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SLC39A12Q504Y0 691 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 LRRC66Q68CR7 880 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 PRRT2Q7Z6L0 340 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 PCNPQ8WW12 178 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SMARCD1Q96GM5 515 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 MGLLQ99685 303 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CCDC32Q9BV29 185 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ABHD16BQ9H3Z7 469 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ELOVL2Q9NXB9 296 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CDH23Q9H251 3354 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 PAPPA2Q9BXP8 1791 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CCDC182A6NF36 153 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 MOXD2PA6NHM9 499 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SNTNA6NMZ2 147 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 POLR1CO15160 346 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 NBNO60934 754 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 KRT6AP02538 564 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 KRT6BP04259 564 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 IL6P05231 212 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CKMT1AP12532 417 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 HOXC13P31276 330 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 SUZ12Q15022 739 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 STK11Q15831 433 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 PRAMEF19Q5SWL8 479 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 UBXN11Q5T124 520 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 C10orf62Q5T681 223 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 TMPRSS11AQ6ZMR5 421 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 RASAL3Q86YV0 1011 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ST13P5Q8NFI4 369 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 B3GNT7Q8NFL0 401 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 NLGN4YQ8NFZ3 816 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 OR52E4Q8NGH9 312 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 PITX2Q99697 317 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 ASPNQ9BXN1 380 aa13.04□□□□□ -0.32
CCDC88C-201ENST00000331194 CASTOR2A6NHX0 329 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 IFRD1O00458 451 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 AOC2O75106 756 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 GLUD1P00367 558 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 NUDT7P0C024 238 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms