RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 WASHC2DQ5SRD0 308 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 TLDC1Q6P9B6 456 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 INO80CQ6PI98 192 aaPredicted RBP12.79□□□□□ -0.36
VPS28-201ENST00000292510 TAOK1Q7L7X3 1001 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 ISCA2Q86U28 154 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 THOC6Q86W42 341 aaKnown RBP12.79□□□□□ -0.36
VPS28-201ENST00000292510 C17orf64Q86WR6 236 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 PLD6Q8N2A8 252 aaKnown RBP12.79□□□□□ -0.36
VPS28-201ENST00000292510 DTWD1Q8N5C7 304 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 UBLCP1Q8WVY7 318 aaPredicted RBP12.79□□□□□ -0.36
VPS28-201ENST00000292510 ISL2Q96A47 359 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 KIAA1143Q96AT1 154 aaPredicted RBP12.79□□□□□ -0.36
VPS28-201ENST00000292510 RHBDF1Q96CC6 855 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 TSNARE1Q96NA8 513 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 ZNF285Q96NJ3 590 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 TMEM79Q9BSE2 394 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 DHRS4Q9BTZ2 278 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 CHST8Q9H2A9 424 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 NMRAL1Q9HBL8 299 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 TMEM184CQ9NVA4 438 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 ZNF358Q9NW07 568 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 CD274Q9NZQ7 290 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 LHX6Q9UPM6 363 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 SLC22A14Q9Y267 594 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 PCDHGA4Q9Y5G9 962 aa12.79□□□□□ -0.36
VPS28-201ENST00000292510 HEATR5BQ9P2D3 2071 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 FEZF1A0PJY2 475 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 TERTO14746 1132 aaKnown RBP12.78□□□□□ -0.36
VPS28-201ENST00000292510 KATNA1O75449 491 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 WDR47O94967 919 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 MED26O95402 600 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 SHBGP04278 402 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 EZRP15311 586 aaKnown RBP12.78□□□□□ -0.36
VPS28-201ENST00000292510 GCGRP47871 477 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 SLC6A12P48065 614 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 RPS18P62269 152 aaKnown RBP12.78□□□□□ -0.36
VPS28-201ENST00000292510 MEF2AQ02078 507 aaPredicted RBP12.78□□□□□ -0.36
VPS28-201ENST00000292510 TCTE1Q5JU00 501 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 CATSPEREQ5SY80 951 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 FAM69BQ5VUD6 431 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 ZNF385CQ66K41 422 aaPredicted RBP12.78□□□□□ -0.36
VPS28-201ENST00000292510 RHBDD2Q6NTF9 364 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 ADGRD1Q6QNK2 874 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 NEIL2Q969S2 332 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 LRFN5Q96NI6 719 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 GPR78Q96P69 363 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 GBP5Q96PP8 586 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 OR2A5Q96R48 311 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 ATOH8Q96SQ7 321 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 HAUS8Q9BT25 410 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 NDC1Q9BTX1 674 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 WWOXQ9NZC7 414 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 AP1M2Q9Y6Q5 423 aa12.78□□□□□ -0.36
VPS28-201ENST00000292510 SUPT3HB4E1H0 165 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 UBXN8O00124 270 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 NKX2-8O15522 239 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 P2RX6O15547 441 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 LCMT2O60294 686 aaKnown RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 SRPX2O60687 465 aaPredicted RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 KERAO60938 352 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SUPT3HO75486 399 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 KLHL2O95198 593 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 KLK3P07288 261 aaPredicted RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 CAPN1P07384 714 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SNRPAP09012 282 aaKnown RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 HBQ1P09105 142 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 ALAS2P22557 587 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 CNTFP26441 200 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SLC26A3P40879 764 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 BCL6P41182 706 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 HSPA7P48741 367 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 HNMTP50135 292 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 NFKB2Q00653 900 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 DNASE1L3Q13609 305 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 NAA30Q147X3 362 aaPredicted RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 GRM7Q14831 915 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SLC9A5Q14940 896 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 FAM83EQ2M2I3 478 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 HKDC1Q2TB90 917 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 FAM198BQ6UWH4 519 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 ZNF517Q6ZMY9 492 aaPredicted RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 TTLL10Q6ZVT0 673 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 GPR155Q7Z3F1 870 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 METTL27Q8N6F8 245 aaPredicted RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 TTC29Q8NA56 475 aaPredicted RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 PDPRQ8NCN5 879 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 STAG3L4Q8TBR4 150 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SLC5A11Q8WWX8 675 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS28-201ENST00000292510 STARD8Q92502 1023 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SLC45A3Q96JT2 553 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 MACROD1Q9BQ69 325 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 SPNS1Q9H2V7 528 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 CUTCQ9NTM9 273 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 TXLNGQ9NUQ3 528 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 NDOR1Q9UHB4 597 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 RALYQ9UKM9 306 aaKnown RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 SRPK3Q9UPE1 567 aa12.77□□□□□ -0.37
VPS28-201ENST00000292510 RUVBL1Q9Y265 456 aaKnown RBP12.77□□□□□ -0.37
VPS28-201ENST00000292510 DYRK1BQ9Y463 629 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms