RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 GTDC1Q4AE62 458 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 NXPE4Q6UWF7 544 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 TRIM69Q86WT6 500 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 ZNF761Q86XN6 746 aaPredicted RBP15.9■□□□□ 0.14
USP4-201ENST00000265560 SLC15A3Q8IY34 581 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 SERPINI1Q99574 410 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 DCLRE1BQ9H816 532 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 AASDHPPTQ9NRN7 309 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 CMTM6Q9NX76 183 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 SPHK1Q9NYA1 384 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 ZIM2Q9NZV7 527 aa15.9■□□□□ 0.14
USP4-201ENST00000265560 SCN2AQ99250 2005 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 A0A0G2JN53 185 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 SLC6A2P23975 617 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 AKT2P31751 481 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 SELPLGQ14242 412 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 UAP1L1Q3KQV9 507 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 GPR153Q6NV75 609 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 AURKBQ96GD4 344 aaPredicted RBP15.89■□□□□ 0.13
USP4-201ENST00000265560 TIMM29Q9BSF4 260 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 PPT2Q9UMR5 302 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 PCDHGA11Q9Y5H2 935 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 ASXL3Q9C0F0 2248 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 RTCAO00442 366 aaKnown RBP15.89■□□□□ 0.13
USP4-201ENST00000265560 PI15O43692 258 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 ANP32DO95626 131 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 SRP54P61011 504 aaKnown RBP15.89■□□□□ 0.13
USP4-201ENST00000265560 ACSM2AQ08AH3 577 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 ACSM2BQ68CK6 577 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 RNF111Q6ZNA4 994 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 SPATA24Q86W54 205 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 OR7A2PQ8NGA2 310 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 NRG4Q8WWG1 115 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 MIR1-1HGQ9H1L0 117 aa15.89■□□□□ 0.13
USP4-201ENST00000265560 WSB2Q9NYS7 404 aaPredicted RBP15.89■□□□□ 0.13
USP4-201ENST00000265560 PRPF19Q9UMS4 504 aaKnown RBP15.89■□□□□ 0.13
USP4-201ENST00000265560 A0A1W2PPV9 198 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 MAPK9P45984 424 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 PTDSS1P48651 473 aaKnown RBP15.88■□□□□ 0.13
USP4-201ENST00000265560 C17orf64Q86WR6 236 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 TBC1D21Q8IYX1 336 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 TMEM145Q8NBT3 493 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 FAM110BQ8TC76 370 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 SLC6A18Q96N87 628 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 DNMT3AQ9Y6K1 912 aaPredicted RBP15.88■□□□□ 0.13
USP4-201ENST00000265560 GNG14A0A1W2PPG7 69 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 H0YIV9 168 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 DFNA5O60443 496 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 SYT12Q8IV01 421 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 WDR48Q8TAF3 677 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 CMTM7Q96FZ5 175 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 OR52E6Q96RD3 313 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 KLHL25Q9H0H3 589 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 ZNF624Q9P2J8 865 aaPredicted RBP15.88■□□□□ 0.13
USP4-201ENST00000265560 PGRP06401 933 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 NCK1P16333 377 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 TEAD1P28347 426 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 GRIA3P42263 894 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 HKDC1Q2TB90 917 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 BTBD3Q9Y2F9 522 aa15.88■□□□□ 0.13
USP4-201ENST00000265560 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.88■□□□□ 0.13
USP4-201ENST00000265560 GPR89AB7ZAQ6 455 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 PPM1DO15297 605 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 GPR89BP0CG08 455 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 CD6P30203 668 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 OR4F3Q6IEY1 312 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 NANOGP8Q6NSW7 305 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 TMIGD1Q6UXZ0 262 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 ARMCX6Q7L4S7 300 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 DHDDSQ86SQ9 333 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 ZBTB18Q99592 522 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 INPP5KQ9BT40 448 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 NANOGQ9H9S0 305 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 SPATA6Q9NWH7 488 aaPredicted RBP15.87■□□□□ 0.13
USP4-201ENST00000265560 VAPAQ9P0L0 249 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 TMEM181Q9P2C4 612 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 LEF1Q9UJU2 399 aaPredicted RBP15.87■□□□□ 0.13
USP4-201ENST00000265560 ICKQ9UPZ9 632 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 LCMT2O60294 686 aaKnown RBP15.87■□□□□ 0.13
USP4-201ENST00000265560 EEDO75530 441 aaKnown RBP15.87■□□□□ 0.13
USP4-201ENST00000265560 RPN2P04844 631 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 THEGLP0DJG4 465 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 ZP2Q05996 745 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 DMPKQ09013 629 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 ATG9BQ674R7 924 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 KIAA0895LQ68EN5 471 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 ANKRD53Q8N9V6 530 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 GPATCH1Q9BRR8 931 aaKnown RBP15.87■□□□□ 0.13
USP4-201ENST00000265560 GPRC5BQ9NZH0 403 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 V9GYQ6 96 aa15.87■□□□□ 0.13
USP4-201ENST00000265560 TRIM38O00635 465 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 UGDHO60701 494 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 ANXA4P09525 319 aaPredicted RBP15.86■□□□□ 0.13
USP4-201ENST00000265560 MTHFD1P11586 935 aaKnown RBP15.86■□□□□ 0.13
USP4-201ENST00000265560 JAK1P23458 1154 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 RAE1P78406 368 aaKnown RBP15.86■□□□□ 0.13
USP4-201ENST00000265560 MC1RQ01726 317 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 SFSWAPQ12872 951 aaKnown RBP15.86■□□□□ 0.13
USP4-201ENST00000265560 MTAPQ13126 283 aa15.86■□□□□ 0.13
USP4-201ENST00000265560 MAPKAPK3Q16644 382 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms