RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 FBXO42Q6P3S6 717 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 SUSD1Q6UWL2 747 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 PIWIL4Q7Z3Z4 852 aaKnown RBP18.42■□□□□ 0.54
CLN3-260ENST00000637578 SELENOSQ9BQE4 189 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 DPH7Q9BTV6 452 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 TRIM55Q9BYV6 548 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 SLC6A20Q9NP91 592 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 SMYD2Q9NRG4 433 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 TXLNGQ9NUQ3 528 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 ZFATQ9P243 1243 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 TRMT6Q9UJA5 497 aaKnown RBP18.42■□□□□ 0.54
CLN3-260ENST00000637578 PADI2Q9Y2J8 665 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 A0A1B0GX78 115 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 CNOT3O75175 753 aaKnown RBP18.42■□□□□ 0.54
CLN3-260ENST00000637578 MCM3P25205 808 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 PRDX1Q06830 199 aaKnown RBP18.42■□□□□ 0.54
CLN3-260ENST00000637578 SSPNQ14714 243 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 GRM7Q14831 915 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 SLMAPQ14BN4 828 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 RBM20Q5T481 1227 aaKnown RBP18.42■□□□□ 0.54
CLN3-260ENST00000637578 FRMPD2BQ6IN97 320 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 CYS1Q717R9 158 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 EEF1AKMT1Q8WVE0 214 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 PLCD4Q9BRC7 762 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 ACAT2Q9BWD1 397 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 MLXIPLQ9NP71 852 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 ZNF71Q9NQZ8 489 aaPredicted RBP18.42■□□□□ 0.54
CLN3-260ENST00000637578 CUTCQ9NTM9 273 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 IRAK4Q9NWZ3 460 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 K7EM74 188 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 DSCR3O14972 297 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 DNAJB5O75953 348 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 C1QAP02745 245 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 RPA3P35244 121 aaPredicted RBP18.41■□□□□ 0.54
CLN3-260ENST00000637578 RELAQ04206 551 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 LACTB2Q53H82 288 aaPredicted RBP18.41■□□□□ 0.54
CLN3-260ENST00000637578 MLIPQ5VWP3 458 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 ICE2Q659A1 982 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 ZNF425Q6IV72 752 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 PAQR3Q6TCH7 311 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 ATG14Q6ZNE5 492 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 TTLL10Q6ZVT0 673 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 UBE2R2Q712K3 238 aaPredicted RBP18.41■□□□□ 0.54
CLN3-260ENST00000637578 PRICKLE2Q7Z3G6 844 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 PAQR7Q86WK9 346 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 ING2Q9H160 280 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 MRPS30Q9NP92 439 aaKnown RBP18.41■□□□□ 0.54
CLN3-260ENST00000637578 IFT80Q9P2H3 777 aaPredicted RBP18.41■□□□□ 0.54
CLN3-260ENST00000637578 CORO1CQ9ULV4 474 aaPredicted RBP18.41■□□□□ 0.54
CLN3-260ENST00000637578 TP53TG5Q9Y2B4 290 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 PSAT1Q9Y617 370 aa18.41■□□□□ 0.54
CLN3-260ENST00000637578 LOC105369274A0A096LPK9 316 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 LOC102723532A0A0G2JNH3 316 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 FAM159BA6NKW6 160 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 CXorf49A8MYA2 514 aaPredicted RBP18.4■□□□□ 0.54
CLN3-260ENST00000637578 CEACAM4O75871 244 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 ACSL3O95573 720 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 TSPAN12O95859 305 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 ALAS2P22557 587 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 IMPA1P29218 277 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 STX2P32856 288 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 NAA30Q147X3 362 aaPredicted RBP18.4■□□□□ 0.54
CLN3-260ENST00000637578 FAM214AQ32MH5 1076 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 WASHC2DQ5SRD0 308 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 CPZQ66K79 652 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 PTRH1Q86Y79 214 aaKnown RBP18.4■□□□□ 0.54
CLN3-260ENST00000637578 OR4N4Q8N0Y3 316 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 PPFIBP2Q8ND30 876 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 OR2Y1Q8NGV0 311 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 FBF1Q8TES7 1133 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 FKBP10Q96AY3 582 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 ZFYVE21Q9BQ24 234 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 SLC26A1Q9H2B4 701 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 TAC3Q9UHF0 121 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 GPN3Q9UHW5 284 aaPredicted RBP18.4■□□□□ 0.54
CLN3-260ENST00000637578 ADAMTS6Q9UKP5 1117 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 PCM1Q15154 2024 aa18.4■□□□□ 0.54
CLN3-260ENST00000637578 A0A0J9YVX5 310 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 ARGFXA6NJG6 315 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 SLC16A5O15375 505 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 ALBP02768 609 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 C8GP07360 202 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 RGS4P49798 205 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 EMP3P54852 163 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 VSX2P58304 361 aaPredicted RBP18.39■□□□□ 0.53
CLN3-260ENST00000637578 ABATP80404 500 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 SP140Q13342 867 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 KBTBD12Q3ZCT8 623 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 WDR93Q6P2C0 686 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 OVCH1Q7RTY7 1134 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 TMEM102Q8N9M5 508 aaPredicted RBP18.39■□□□□ 0.53
CLN3-260ENST00000637578 TTC29Q8NA56 475 aaPredicted RBP18.39■□□□□ 0.53
CLN3-260ENST00000637578 MCOLN3Q8TDD5 553 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 TXLNGYQ9BZA5 131 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 PARVBQ9HBI1 364 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 NDOR1Q9UHB4 597 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 ANAPC2Q9UJX6 822 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 PDE10AQ9Y233 779 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 VWA7Q9Y334 891 aa18.39■□□□□ 0.53
CLN3-260ENST00000637578 PCDHGA9Q9Y5G4 932 aaKnown RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms