RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 MLNP12872 115 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 RPA3P35244 121 aaPredicted RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 SLC26A3P40879 764 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 CARSP49589 748 aaKnown RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 PNLIPRP1P54315 467 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 CCZ1BP86790 482 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 CCZ1P86791 482 aaPredicted RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 RELAQ04206 551 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 CTBP1Q13363 440 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 DHX34Q14147 1143 aaKnown RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 RBBP7Q16576 425 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 TUBB8Q3ZCM7 444 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 VWA2Q5GFL6 755 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 ZNF425Q6IV72 752 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 TTC27Q6P3X3 843 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 ZNF549Q6P9A3 640 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 NEK10Q6ZWH5 1172 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 KCNMB4Q86W47 210 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 PAQR7Q86WK9 346 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 SPNS2Q8IVW8 549 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 DENND6AQ8IWF6 608 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 PRSS58Q8IYP2 241 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 RASGEF1CQ8N431 466 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 ARHGEF39Q8N4T4 335 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 PPP4R1Q8TF05 950 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 ZNF480Q8WV37 535 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 ASB11Q8WXH4 323 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 THOC3Q96J01 351 aaKnown RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 MS4A14Q96JA4 679 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 C10orf90Q96M02 699 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 OR2A5Q96R48 311 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 LMF1Q96S06 567 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 WDR77Q9BQA1 342 aaPredicted RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 CRB3Q9BUF7 120 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 SYNPO2LQ9H987 977 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 FAM114A2Q9NRY5 505 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 SAMD15Q9P1V8 674 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 KLHL42Q9P2K6 505 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 TAC3Q9UHF0 121 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 ERRFI1Q9UJM3 462 aaPredicted RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 C3orf18Q9UK00 162 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 CDC14AQ9UNH5 594 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 PPP2R2CQ9Y2T4 447 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 MED16Q9Y2X0 877 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 DHRS7Q9Y394 339 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 NEU2Q9Y3R4 380 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 DOCK10Q96BY6 2186 aa7.26□□□□□ -1.25
CUX1-219ENST00000606749 PRRC2CQ9Y520 2896 aaKnown RBP7.26□□□□□ -1.25
CUX1-219ENST00000606749 ICE1Q9Y2F5 2266 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 UTP20O75691 2785 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 A1L4Q6 167 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ZNF839A8K0R7 811 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 E7ENX8 843 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 GOLGA8MH3BSY2 632 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 FOXS1O43638 330 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ZBTB14O43829 449 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 KIF5CO60282 957 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 PHF2O75151 1096 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 VPS26AO75436 327 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 HAUS5O94927 633 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 LDLRP01130 860 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 F7P08709 466 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 MPC1LP0DKB6 136 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ACPPP15309 386 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 EZRP15311 586 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 FBLP22087 321 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 COILP38432 576 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 SKIV2L2P42285 1042 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 MAGEA3P43357 314 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 EMP2P54851 167 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 TAP2Q03519 686 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 CUL1Q13616 776 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 TSTA3Q13630 321 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 THOC5Q13769 683 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 ELOAQ14241 798 aaKnown RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 CYP1B1Q16678 543 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 HKDC1Q2TB90 917 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 IRAK1BP1Q5VVH5 260 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ICE2Q659A1 982 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ZNF470Q6ECI4 717 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ISLR2Q6UXK2 745 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 NDUFAF7Q7L592 441 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 LRRC56Q8IYG6 542 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 AGGF1Q8N302 714 aaeCLIP7.25□□□□□ -1.253e-10■■■■□ 20.6
CUX1-219ENST00000606749 CSNK1A1LQ8N752 337 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 AMER3Q8N944 861 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 FBXO15Q8NCQ5 510 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 PPFIBP2Q8ND30 876 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ST6GALNAC3Q8NDV1 305 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 CATSPER1Q8NEC5 780 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 GIMAP7Q8NHV1 300 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 COG1Q8WTW3 980 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 KCNJ9Q92806 393 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 ZNF669Q96BR6 464 aaPredicted RBP7.25□□□□□ -1.25
CUX1-219ENST00000606749 C8orf44Q96CB5 159 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 MVB12AQ96EY5 273 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 PBKQ96KB5 322 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 CABS1Q96KC9 395 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 SIGLEC10Q96LC7 697 aa7.25□□□□□ -1.25
CUX1-219ENST00000606749 SERPINB12Q96P63 405 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms