RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 FANCEQ9HB96 536 aa10.68□□□□□ -0.7
VRK3-210ENST00000596121 MRPS30Q9NP92 439 aaKnown RBP10.68□□□□□ -0.7
VRK3-210ENST00000596121 SLC22A11Q9NSA0 550 aa10.68□□□□□ -0.7
VRK3-210ENST00000596121 INTS7Q9NVH2 962 aaKnown RBP10.68□□□□□ -0.7
VRK3-210ENST00000596121 MTRF1LQ9UGC7 380 aaKnown RBP10.68□□□□□ -0.7
VRK3-210ENST00000596121 FITM1A5D6W6 292 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 H0YGG7 62 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 HAT1O14929 419 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ZSCAN9O15535 394 aaPredicted RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 MAP3K7O43318 606 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 KATNA1O75449 491 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 STATHP02808 62 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 MT-ND3P03897 115 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ENO2P09104 434 aaPredicted RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 SLC35E2BP0CK96 405 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 CCDC166P0CW27 439 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ATXN8OSP0DMR3 200 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 CD1DP15813 335 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 STMN1P16949 149 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 RAB10P61026 200 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ARF3P61204 181 aaPredicted RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 NAB1Q13506 487 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 TBR1Q16650 682 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 WASHC2DQ5SRD0 308 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 PRAMEF13Q5VWM6 474 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 RHBDD2Q6NTF9 364 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 GPR135Q8IZ08 494 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 SHISA5Q8N114 240 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ARHGEF39Q8N4T4 335 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 STARD8Q92502 1023 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ANKRD7Q92527 254 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 N4BP2L2Q92802 583 aaPredicted RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 EXTL1Q92935 676 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ALKBH8Q96BT7 664 aaKnown RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 MED8Q96G25 268 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 OR2A5Q96R48 311 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 CYTH2Q99418 400 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 SELENOSQ9BQE4 189 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 TXLNGYQ9BZA5 131 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 DERL2Q9GZP9 239 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 EPB41L4BQ9H329 900 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 CCDC177Q9NQR7 707 aaPredicted RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 IGSF5Q9NSI5 407 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ARL15Q9NXU5 204 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 TXNDC16Q9P2K2 825 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 CTNNAL1Q9UBT7 734 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 NOVA2Q9UNW9 492 aaKnown RBP10.67□□□□□ -0.7
VRK3-210ENST00000596121 PCDHGA6Q9Y5G7 932 aa10.67□□□□□ -0.7
VRK3-210ENST00000596121 ZNF839A8K0R7 811 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 TAPBPO15533 448 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 P2RX6O15547 441 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 LCMT2O60294 686 aaKnown RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 ZNF500O60304 480 aaPredicted RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 SRPX2O60687 465 aaPredicted RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 HIST1H2AGP0C0S8 130 aaPredicted RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 PRKAR1AP10644 381 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 HIST1H2ADP20671 130 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 GCAP28676 217 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 SLC12A2P55011 1212 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 AP1S2P56377 157 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 CSNK1G2P78368 415 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 ABATP80404 500 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 IRF9Q00978 393 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 IL10RAQ13651 578 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 SLC9A5Q14940 896 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 SLMAPQ14BN4 828 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 HKDC1Q2TB90 917 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 PRTGQ2VWP7 1150 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 ZC3H12BQ5HYM0 836 aaKnown RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 THEMIS2Q5TEJ8 643 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 MROH9Q5TGP6 573 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 C16orf46Q6P387 395 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 TLDC1Q6P9B6 456 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 IFT20Q8IY31 132 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 ENDOVQ8N8Q3 282 aaKnown RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 EXD3Q8N9H8 876 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 SLC44A1Q8WWI5 657 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 KIAA1143Q96AT1 154 aaPredicted RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 TSPAN17Q96FV3 270 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 HIST1H2AHQ96KK5 128 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 HIST1H2AJQ99878 128 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 ZFYVE21Q9BQ24 234 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 MACROD1Q9BQ69 325 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 H2AFJQ9BTM1 129 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 SPNS1Q9H2V7 528 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 ACTL8Q9H568 366 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 SNX7Q9UNH6 387 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 FARSAQ9Y285 508 aaKnown RBP10.66□□□□□ -0.7
VRK3-210ENST00000596121 OARD1Q9Y530 152 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 AP1M2Q9Y6Q5 423 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 PCSK5Q92824 1860 aa10.66□□□□□ -0.7
VRK3-210ENST00000596121 ZNF891A8MT65 544 aaPredicted RBP10.65□□□□□ -0.7
VRK3-210ENST00000596121 C21orf140B9A014 251 aa10.65□□□□□ -0.7
VRK3-210ENST00000596121 CREG1O75629 220 aa10.65□□□□□ -0.7
VRK3-210ENST00000596121 KLF7O75840 302 aaPredicted RBP10.65□□□□□ -0.7
VRK3-210ENST00000596121 ALDOAP04075 364 aaKnown RBP10.65□□□□□ -0.7
VRK3-210ENST00000596121 EIF2S1P05198 315 aaKnown RBP10.65□□□□□ -0.7
VRK3-210ENST00000596121 C2P06681 752 aa10.65□□□□□ -0.7
VRK3-210ENST00000596121 KLK3P07288 261 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms