RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 AGPSO00116 658 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 CDKN2DP55273 166 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 NAA25Q14CX7 972 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 RBM20Q5T481 1227 aaKnown RBP14.19□□□□□ -0.14
CLN3-213ENST00000565047 TEDDM1Q5T9Z0 273 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 STEAP4Q687X5 459 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 JMJD6Q6NYC1 403 aaPredicted RBP14.19□□□□□ -0.14
CLN3-213ENST00000565047 KIRREL2Q6UWL6 708 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 IGFL3Q6UXB1 125 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 HPS6Q86YV9 775 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 EEF1AKMT1Q8WVE0 214 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 CERS2Q96G23 380 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 FER1L6-AS2Q96M78 137 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 NDNQ99608 321 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 MESP1Q9BRJ9 268 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 NAT9Q9BTE0 207 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 MRPS30Q9NP92 439 aaKnown RBP14.19□□□□□ -0.14
CLN3-213ENST00000565047 IRAK4Q9NWZ3 460 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 GPR83Q9NYM4 423 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 C5AR2Q9P296 337 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 SLC17A6Q9P2U8 582 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 ZC3H7BQ9UGR2 993 aaKnown RBP14.19□□□□□ -0.14
CLN3-213ENST00000565047 TAC3Q9UHF0 121 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 MAP4K5Q9Y4K4 846 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 HS3ST3B1Q9Y662 390 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 TEX264Q9Y6I9 313 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 PCM1Q15154 2024 aa14.19□□□□□ -0.14
CLN3-213ENST00000565047 ZBTB14O43829 449 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 PIM1P11309 404 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 RPA3P35244 121 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 ELK3P41970 407 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 GNG11P61952 73 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 ABATP80404 500 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 FRG1Q14331 258 aaKnown RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 MORF4L2Q15014 288 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 PRMT9Q6P2P2 845 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 TRMT10BQ6PF06 316 aaKnown RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 PAQR3Q6TCH7 311 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 KIAA0408Q6ZU52 694 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 SYDE1Q6ZW31 735 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 UBE2R2Q712K3 238 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 GALNT16Q8N428 558 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 METTL27Q8N6F8 245 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 TTC29Q8NA56 475 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 CCDC68Q9H2F9 335 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 ZBTB20Q9HC78 741 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 ZNF304Q9HCX3 659 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 CUEDC1Q9NWM3 386 aaPredicted RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 PDE10AQ9Y233 779 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 RUVBL1Q9Y265 456 aaKnown RBP14.18□□□□□ -0.14
CLN3-213ENST00000565047 SAR1BQ9Y6B6 198 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 MAU2Q9Y6X3 613 aa14.18□□□□□ -0.14
CLN3-213ENST00000565047 ZNF839A8K0R7 811 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 CYSRT1A8MQ03 144 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 SMAPO00193 183 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 FOXS1O43638 330 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 VPS26AO75436 327 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 SEC31AO94979 1220 aaKnown RBP14.17□□□□□ -0.14
CLN3-213ENST00000565047 IGHEP01854 428 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 ATXN8OSP0DMR3 200 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 CARSP49589 748 aaKnown RBP14.17□□□□□ -0.14
CLN3-213ENST00000565047 PGGT1BP53609 377 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 DR1Q01658 176 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 RAPSNQ13702 412 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 MYBPC3Q14896 1274 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 HKDC1Q2TB90 917 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 CRB2Q5IJ48 1285 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 VWA5B1Q5TIE3 1220 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 SLC6A19Q695T7 634 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 SHISA6Q6ZSJ9 500 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 KLHL7Q8IXQ5 586 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 AMER3Q8N944 861 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 CAPZA3Q96KX2 299 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 TRIM51Q9BSJ1 452 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 SOX17Q9H6I2 414 aaPredicted RBP14.17□□□□□ -0.14
CLN3-213ENST00000565047 TAS2R13Q9NYV9 303 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 NXT1Q9UKK6 140 aaKnown RBP14.17□□□□□ -0.14
CLN3-213ENST00000565047 HEATR5BQ9P2D3 2071 aa14.17□□□□□ -0.14
CLN3-213ENST00000565047 NUP210LQ5VU65 1888 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 KCNE1BA0A087WTH5 132 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 E7ESA3 106 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 PEX12O00623 359 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 HAT1O14929 419 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 P2RX6O15547 441 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 TTI1O43156 1089 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 DPM1O60762 260 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 EIF2S1P05198 315 aaKnown RBP14.16□□□□□ -0.14
CLN3-213ENST00000565047 ZGLP1P0C6A0 271 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 EZRP15311 586 aaKnown RBP14.16□□□□□ -0.14
CLN3-213ENST00000565047 SLC26A3P40879 764 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 EFNA3P52797 238 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 ITGA8P53708 1063 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 KLC1Q07866 573 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 Q0VFX4 171 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 PHKG1Q16816 387 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 MUM1Q2TAK8 710 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 BBS9Q3SYG4 887 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 HP1BP3Q5SSJ5 553 aaPredicted RBP14.16□□□□□ -0.14
CLN3-213ENST00000565047 GARNL3Q5VVW2 1013 aa14.16□□□□□ -0.14
CLN3-213ENST00000565047 ATG9BQ674R7 924 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms