RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SPATA6LQ8N4H0 392 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 OR1L3Q8NH93 324 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 PTERQ96BW5 349 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 RHBDF1Q96CC6 855 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 TSNARE1Q96NA8 513 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ZNF285Q96NJ3 590 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ZFYVE21Q9BQ24 234 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 EFHD1Q9BUP0 239 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 PARD6BQ9BYG5 372 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ATG10Q9H0Y0 220 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 ALG9Q9H6U8 611 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 TMEM184CQ9NVA4 438 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.48□□□□□ -0.41
NEDD8-208ENST00000560427 RNF112Q9ULX5 631 aa12.48□□□□□ -0.41
NEDD8-208ENST00000560427 V9GYY5 206 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-208ENST00000560427 IGKV1-8A0A0C4DH67 115 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 ZSCAN9O15535 394 aaPredicted RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 KLK10O43240 276 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 CDH16O75309 829 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 NPPBP16860 134 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 SLC6A12P48065 614 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 OR4D1Q15615 310 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 ZXDCQ2QGD7 858 aaPredicted RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 PTCHD3Q3KNS1 767 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 C6orf15Q6UXA7 325 aaPredicted RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 MCATQ8IVS2 390 aaKnown RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 SPACA3Q8IXA5 215 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 CACNA2D3Q8IZS8 1091 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 RIBC1Q8N443 379 aaPredicted RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 MREGQ8N565 214 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 ABHD11Q8NFV4 315 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 PROKR1Q8TCW9 393 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 ACMSDQ8TDX5 336 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 KCTD4Q8WVF5 259 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 NKD1Q969G9 470 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 NXNL1Q96CM4 212 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 THAP11Q96EK4 314 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 ATOH8Q96SQ7 321 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 DPH2Q9BQC3 489 aaPredicted RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 CAPS2Q9BXY5 557 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 VPS11Q9H270 941 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 WWOXQ9NZC7 414 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 TMCO1Q9UM00 188 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 KLHL20Q9Y2M5 609 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 KCNE2Q9Y6J6 123 aa12.47□□□□□ -0.41
NEDD8-208ENST00000560427 MAP1BP46821 2468 aaKnown RBP12.47□□□□□ -0.41
NEDD8-208ENST00000560427 FITM1A5D6W6 292 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 C21orf140B9A014 251 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 TXNDC9O14530 226 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 CTSVO60911 334 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 TIAF1O95411 115 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 RBP1P09455 135 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 CCNYL3P0C7X3 344 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 ZNF28P17035 718 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 GRK3P35626 688 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 STAT5AP42229 794 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 ARSFP54793 590 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 EMP3P54852 163 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 RPS15AP62244 130 aaKnown RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 IRF9Q00978 393 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 TLE3Q04726 772 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 GRM7Q14831 915 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 DEFB110Q30KQ9 67 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 METTL2BQ6P1Q9 378 aaKnown RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 ADCK2Q7Z695 626 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 THOC6Q86W42 341 aaKnown RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 TBC1D19Q8N5T2 526 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 IL22RA1Q8N6P7 574 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 TTC29Q8NA56 475 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 UBTD2Q8WUN7 234 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 SLC5A11Q8WWX8 675 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 KIAA1143Q96AT1 154 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 PYCR2Q96C36 320 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 GPR78Q96P69 363 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 DCBLD2Q96PD2 775 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 CCNL2Q96S94 520 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 C17orf62Q9BQA9 187 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 SELENOSQ9BQE4 189 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 NDC1Q9BTX1 674 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 SARGQ9BW04 601 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 UNKQ9C0B0 810 aaKnown RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 ACTR5Q9H9F9 607 aaPredicted RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 ABCF3Q9NUQ8 709 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 IRAK4Q9NWZ3 460 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 GPRC5BQ9NZH0 403 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 CD274Q9NZQ7 290 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 PTBP2Q9UKA9 531 aaKnown RBP12.46□□□□□ -0.41
NEDD8-208ENST00000560427 PADI1Q9ULC6 663 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 DYRK1BQ9Y463 629 aa12.46□□□□□ -0.41
NEDD8-208ENST00000560427 AHCTF1Q8WYP5 2266 aa12.46□□□□□ -0.42
NEDD8-208ENST00000560427 FREM2Q5SZK8 3169 aa12.46□□□□□ -0.42
NEDD8-208ENST00000560427 KCNE1BA0A087WTH5 132 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 NCF1BA6NI72 391 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 NCF1CA8MVU1 366 aaPredicted RBP12.45□□□□□ -0.42
NEDD8-208ENST00000560427 H7BY64 318 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 ZNF749O43361 778 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 RFPL1O75677 317 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 STK16O75716 305 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 SHBGP04278 402 aa12.45□□□□□ -0.42
NEDD8-208ENST00000560427 KLK3P07288 261 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms