RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PTERQ96BW5 349 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 SELENOSQ9BQE4 189 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 HAUS8Q9BT25 410 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 DHRS4Q9BTZ2 278 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 SLC7A5P2Q9GIP4 190 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 VPS11Q9H270 941 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 ALG9Q9H6U8 611 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 ACTR5Q9H9F9 607 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-228ENST00000557302 IGSF5Q9NSI5 407 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 FETUBQ9UGM5 382 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 RNF112Q9ULX5 631 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 AP1M2Q9Y6Q5 423 aa13.04□□□□□ -0.32
SHMT2-228ENST00000557302 SNRNP200O75643 2136 aaKnown RBP13.04□□□□□ -0.32
SHMT2-228ENST00000557302 IGKV1-8A0A0C4DH67 115 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 A0A0J9YVX5 310 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 NCF1BA6NI72 391 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 NCF1CA8MVU1 366 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 H7BY64 318 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ZSCAN9O15535 394 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ZNF749O43361 778 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 SNRPAP09012 282 aaKnown RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 HBQ1P09105 142 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 CCNYL3P0C7X3 344 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 NCF1P14598 390 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 HRH2P25021 359 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 GCAP28676 217 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 MAGEA12P43365 314 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 IRF9Q00978 393 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ABHD18Q0P651 414 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ZXDCQ2QGD7 858 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 TCTE1Q5JU00 501 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 PRAMEF17Q5VTA0 474 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ZNF425Q6IV72 752 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 TLDC1Q6P9B6 456 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ADGRD1Q6QNK2 874 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 RNF44Q7L0R7 432 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 VASH2Q86V25 355 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 C17orf64Q86WR6 236 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 CENPLQ8N0S6 344 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 TCAIMQ8N3R3 496 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 STAG3L4Q8TBR4 150 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 KCTD4Q8WVF5 259 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 HNRNPLLQ8WVV9 542 aaKnown RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 PYCR2Q96C36 320 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 RHBDF1Q96CC6 855 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 NXNL1Q96CM4 212 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 PRAP1Q96NZ9 151 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 CCNL2Q96S94 520 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ZFYVE21Q9BQ24 234 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 SPRTNQ9H040 489 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 CUEDC1Q9NWM3 386 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 CD274Q9NZQ7 290 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 PSMC3IPQ9P2W1 217 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-228ENST00000557302 PADI1Q9ULC6 663 aa13.03□□□□□ -0.32
SHMT2-228ENST00000557302 ANKRD12Q6UB98 2062 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 IQANK1A0A1B0GTG1 560 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 H3BMH7 237 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 NRP2O60462 931 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 SRPX2O60687 465 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 KERAO60938 352 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 KLHL2O95198 593 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 S100BP04271 92 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 CTSBP07858 339 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 EZRP15311 586 aaKnown RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 NPPBP16860 134 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 STAT5AP42229 794 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 VSX2P58304 361 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 RELAQ04206 551 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 PTCHD3Q3KNS1 767 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 CDKL4Q5MAI5 379 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 KLC3Q6P597 504 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 EMBQ6PCB8 327 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 ISCA2Q86U28 154 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 CNPY4Q8N129 248 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 ZNF655Q8N720 491 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 AENQ8WTP8 325 aaKnown RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 EXT2Q93063 718 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 KIAA1143Q96AT1 154 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 MTBPQ96DY7 904 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 CLIP3Q96DZ5 547 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 LRFN5Q96NI6 719 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 GPN2Q9H9Y4 310 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-228ENST00000557302 LHX9Q9NQ69 397 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 TMEM184CQ9NVA4 438 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 WWOXQ9NZC7 414 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 NUDT4Q9NZJ9 180 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 SRPK3Q9UPE1 567 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 SH2B3Q9UQQ2 575 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 DYRK1BQ9Y463 629 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 PTPRQQ9UMZ3 2332 aa13.02□□□□□ -0.33
SHMT2-228ENST00000557302 SPTBP11277 2137 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 FAM208BQ5VWN6 2430 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 CCDC189A1A4V9 331 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SYCE1LA8MT33 242 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SUPT3HB4E1H0 165 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 HAT1O14929 419 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 SUPT3HO75486 399 aa13.01□□□□□ -0.33
SHMT2-228ENST00000557302 IPO13O94829 963 aaKnown RBP13.01□□□□□ -0.33
SHMT2-228ENST00000557302 KLK3P07288 261 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-228ENST00000557302 CDH1P12830 882 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms