RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SLC26A3P40879 764 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 MAT1AQ00266 395 aaKnown RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 HKDC1Q2TB90 917 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 BTBD16Q32M84 506 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 LRRC38Q5VT99 294 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 H3F3CQ6NXT2 135 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 FBXO42Q6P3S6 717 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 CD163Q86VB7 1156 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 TMTC1Q8IUR5 882 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 CCDC71Q8IV32 467 aaPredicted RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 CCDC50Q8IVM0 306 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 SLC22A15Q8IZD6 547 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 TAB3Q8N5C8 712 aaPredicted RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 LILRB4Q8NHJ6 448 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 HDAC10Q969S8 669 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 MMABQ96EY8 250 aaPredicted RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 CDKN2AIPNLQ96HQ2 116 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 CABS1Q96KC9 395 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 TBL1YQ9BQ87 522 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 TGIF2Q9GZN2 237 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 C14orf105Q9NVL8 296 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 NLE1Q9NVX2 485 aaPredicted RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 ZNF358Q9NW07 568 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 CHMP5Q9NZZ3 219 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 LCMT1Q9UIC8 334 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 MKL2Q9ULH7 1088 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 RUVBL1Q9Y265 456 aaKnown RBP12.22□□□□□ -0.45
VPS29-211ENST00000553128 FAM169AQ9Y6X4 670 aa12.22□□□□□ -0.45
VPS29-211ENST00000553128 A0A0U1RQJ8 604 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 KIAA1324LA8MWY0 1029 aaPredicted RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 FOXO6A8MYZ6 492 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 H0YGG7 62 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 FOXS1O43638 330 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 KDM1AO60341 852 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 NEURL1O76050 574 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 MLYCDO95822 493 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 HOXD4P09016 255 aaPredicted RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 ICAM2P13598 275 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 ARF3P61204 181 aaPredicted RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 ADAM8P78325 824 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 FOLH1Q04609 750 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 HSPA14Q0VDF9 509 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 MYBPHQ13203 477 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 TFDP2Q14188 446 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 ODF2Q5BJF6 829 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 DNAJC21Q5F1R6 531 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 ZNF468Q5VIY5 522 aaPredicted RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 PACS1Q6VY07 963 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 PRIMA1Q86XR5 153 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 DCUN1D3Q8IWE4 304 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 ARHGEF39Q8N4T4 335 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 CPSF7Q8N684 471 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 OR2L3Q8NG85 312 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 NANOS1Q8WY41 292 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 NINJ1Q92982 152 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 ZNF354BQ96LW1 612 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 C19orf43Q9BQ61 176 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 UTP23Q9BRU9 249 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 VN1R1Q9GZP7 353 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 PIH1D1Q9NWS0 290 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 DNAJB12Q9NXW2 375 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 DDX56Q9NY93 547 aaKnown RBP12.21□□□□□ -0.45
VPS29-211ENST00000553128 KCNN3Q9UGI6 736 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 ST6GALNAC2Q9UJ37 374 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 KLK4Q9Y5K2 254 aa12.21□□□□□ -0.45
VPS29-211ENST00000553128 NSD1Q96L73 2696 aaPredicted RBP12.21□□□□□ -0.46
VPS29-211ENST00000553128 hCG_1818297A0A087WSY0 165 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 A0A0A6YYC8 382 aaPredicted RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 A0A1W2PPV9 198 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 IQCF5A8MTL0 148 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 I3L1I5 382 aaPredicted RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 GPC4O75487 556 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 ZWINTO95229 277 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 SP1P08047 785 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 TMEM253P0C7T8 217 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 C8orf89P0DMQ9 161 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 ERVK-10P10266 1014 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 COMTP21964 271 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 FOXN2P32314 431 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 NR0B1P51843 470 aaKnown RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 ZBED6P86452 979 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 ITIH4Q14624 930 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 SKOR2Q2VWA4 1001 aaPredicted RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 ANKRD20A2Q5SQ80 823 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 ANKRD20A1Q5TYW2 823 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 ANKRD20A3Q5VUR7 823 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 CES4AQ5XG92 561 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 PLAG1Q6DJT9 500 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 OR2A1Q8NGT9 310 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 FAM57AQ8TBR7 257 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 ARNT2Q9HBZ2 717 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 MKKSQ9NPJ1 570 aaPredicted RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 SLC39A10Q9ULF5 831 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 RUVBL2Q9Y230 463 aaKnown RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 PLEKHA6Q9Y2H5 1048 aa12.2□□□□□ -0.46
VPS29-211ENST00000553128 FBN1P35555 2871 aaKnown RBP12.2□□□□□ -0.46
VPS29-211ENST00000553128 A0A1B0GTH9 108 aa12.19□□□□□ -0.46
VPS29-211ENST00000553128 OR2A25A4D2G3 310 aa12.19□□□□□ -0.46
VPS29-211ENST00000553128 GABRR3A8MPY1 467 aa12.19□□□□□ -0.46
VPS29-211ENST00000553128 HACD1B0YJ81 288 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms