RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CT55Q8WUE5 264 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 ATL1Q8WXF7 558 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 STARD8Q92502 1023 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 FBXL8Q96CD0 374 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 CLIP3Q96DZ5 547 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 ZFYVE21Q9BQ24 234 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 DPH2Q9BQC3 489 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 SELENOSQ9BQE4 189 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 FAM117AQ9C073 453 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 SPRTNQ9H040 489 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 PCMTD2Q9NV79 361 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 UTP6Q9NYH9 597 aaKnown RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 PSD3Q9NYI0 1048 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 IL17BQ9UHF5 180 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 KCND3Q9UK17 655 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 PCM1Q15154 2024 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 MEN1O00255 615 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 SRPX2O60687 465 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 SASH3O75995 380 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 EZRP15311 586 aaKnown RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 F8A1P23610 371 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 HRH2P25021 359 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 RHDQ02161 417 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 RELAQ04206 551 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 NAE1Q13564 534 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 TSNQ15631 228 aaKnown RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 CRTC2Q53ET0 693 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 YOD1Q5VVQ6 348 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 FAM198BQ6UWH4 519 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 LCTLQ6UWM7 567 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 CCDC91Q7Z6B0 441 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF655Q8N720 491 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 EIF1ADQ8N9N8 165 aaKnown RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 OR56A3Q8NH54 315 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 MR1Q95460 341 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 MED8Q96G25 268 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 UBXN10Q96LJ8 280 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 SLC7A5P2Q9GIP4 190 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 ATG10Q9H0Y0 220 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 AKIRIN1Q9H9L7 192 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-208ENST00000532560 IRAK4Q9NWZ3 460 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 CTNNAL1Q9UBT7 734 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 SNX7Q9UNH6 387 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 OARD1Q9Y530 152 aa14.41□□□□□ -0.1
CPSF1-208ENST00000532560 HEATR5BQ9P2D3 2071 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 FITM1A5D6W6 292 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 GUCA1CO95843 209 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 ABHD2P08910 425 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 SLC35E2BP0CK96 405 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CCDC166P0CW27 439 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 TCN2P20062 427 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CRABP2P29373 138 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CSRP3P50461 194 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 ATP6V0D1P61421 351 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 VSNL1P62760 191 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 MC1RQ01726 317 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 GRM7Q14831 915 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 ZXDCQ2QGD7 858 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-208ENST00000532560 HSP90B2PQ58FF3 399 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 FRMPD2BQ6IN97 320 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CAPN13Q6MZZ7 669 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-208ENST00000532560 FRA10AC1Q70Z53 315 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CMC1Q7Z7K0 106 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 C17orf64Q86WR6 236 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 SLC44A1Q8WWI5 657 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 GBP5Q96PP8 586 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 NDC1Q9BTX1 674 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 GPR87Q9BY21 358 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CHST8Q9H2A9 424 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 ABCF3Q9NUQ8 709 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 CUEDC1Q9NWM3 386 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-208ENST00000532560 ANKRD12Q6UB98 2062 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 FAM208BQ5VWN6 2430 aa14.4□□□□□ -0.1
CPSF1-208ENST00000532560 A0A087WUV0 522 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 A0A0J9YVX5 310 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 HMX2A2RU54 273 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 ERVH48-1M5A8F1 160 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 ITGB2P05107 769 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 ANXA5P08758 320 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 RAB40ALP0C0E4 278 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 CD1DP15813 335 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 TNFRSF8P28908 595 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 SLC26A3P40879 764 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 HNMTP50135 292 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 ARSFP54793 590 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 CDC20Q12834 499 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 BMPR2Q13873 1038 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 UAP1Q16222 522 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 PTCHD3Q3KNS1 767 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 FBXO42Q6P3S6 717 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 FAM199XQ6PEV8 388 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 TRMT10CQ7L0Y3 403 aaKnown RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 ADCK2Q7Z695 626 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 TTC29Q8NA56 475 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 TTC9Q92623 222 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 MRRFQ96E11 262 aaKnown RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 UBL7Q96S82 380 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 PAFAH2Q99487 392 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 HAUS8Q9BT25 410 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 TXLNGQ9NUQ3 528 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms