RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 COX15Q7KZN9 410 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 CSNK1A1LQ8N752 337 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 RBMXL3Q8N7X1 1067 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 PPFIBP2Q8ND30 876 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 GIMAP7Q8NHV1 300 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 MCOLN3Q8TDD5 553 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 ZNF480Q8WV37 535 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 MIEF2Q96C03 454 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 RUNDC3BQ96NL0 473 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 AARSD1Q9BTE6 412 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 CRB3Q9BUF7 120 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SLC29A3Q9BZD2 475 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 ILKAPQ9H0C8 392 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 DDX47Q9H0S4 455 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 SLC6A20Q9NP91 592 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 PPANQ9NQ55 473 aaKnown RBP13.05□□□□□ -0.32
TCOF1-215ENST00000515516 TAS2R13Q9NYV9 303 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 LUZP4Q9P127 313 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 CTSFQ9UBX1 484 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 MAP4K5Q9Y4K4 846 aa13.05□□□□□ -0.32
TCOF1-215ENST00000515516 MYO18BQ8IUG5 2567 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 E7ENX8 843 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 GFYI3L273 518 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 ANXA5P08758 320 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 EZRP15311 586 aaKnown RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 SOX8P57073 446 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 YBX1P67809 324 aaKnown RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 TAP2Q03519 686 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 DHX9Q08211 1270 aaKnown RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 CRYMQ14894 314 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 BBS9Q3SYG4 887 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 TUBB8Q3ZCM7 444 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 GARNL3Q5VVW2 1013 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 PRAMEF13Q5VWM6 474 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 CYHR1Q6ZMK1 362 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 SYDE1Q6ZW31 735 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 PAQR7Q86WK9 346 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 CPNE9Q8IYJ1 553 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 IQCKQ8N0W5 287 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 C2CD4AQ8NCU7 369 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 CD200R1Q8TD46 325 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 SPSB2Q99619 263 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 ZNF552Q9H707 407 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 STOX2Q9P2F5 926 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-215ENST00000515516 PCYOX1Q9UHG3 505 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 B3GNT3Q9Y2A9 372 aa13.04□□□□□ -0.32
TCOF1-215ENST00000515516 ASH1LQ9NR48 2969 aaKnown RBP13.03□□□□□ -0.32
TCOF1-215ENST00000515516 PIKFYVEQ9Y2I7 2098 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 VSTM2BA6NLU5 285 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 SOCS6O14544 535 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 NRP2O60462 931 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 C8GP07360 202 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 HIST1H2AGP0C0S8 130 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-215ENST00000515516 ZGLP1P0C6A0 271 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 HIST1H2ADP20671 130 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 GNLYP22749 145 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 HRH2P25021 359 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 RELAQ04206 551 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 NDUFA9Q16795 377 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 PRTGQ2VWP7 1150 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 FHL5Q5TD97 284 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 AGAP7PQ5VUJ5 663 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 KIRREL2Q6UWL6 708 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 IGFL3Q6UXB1 125 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 PIWIL4Q7Z3Z4 852 aaKnown RBP13.03□□□□□ -0.32
TCOF1-215ENST00000515516 PRSS58Q8IYP2 241 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 PDIK1LQ8N165 341 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 MYO1HQ8N1T3 1032 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 AGGF1Q8N302 714 aaeCLIP13.03□□□□□ -0.328e-7■□□□□ 10.4
TCOF1-215ENST00000515516 STT3BQ8TCJ2 826 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 SLCO2A1Q92959 643 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 MVB12AQ96EY5 273 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 HIST1H2AHQ96KK5 128 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 CAPZA3Q96KX2 299 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 CCDC138Q96M89 665 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 AGAP4Q96P64 663 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 NDNQ99608 321 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 HIST1H2AJQ99878 128 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 H2AFJQ9BTM1 129 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 PCBD2Q9H0N5 130 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 CCDC177Q9NQR7 707 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-215ENST00000515516 C3orf18Q9UK00 162 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 MED16Q9Y2X0 877 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 HS3ST3B1Q9Y662 390 aa13.03□□□□□ -0.32
TCOF1-215ENST00000515516 H7BY64 318 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 MASP2O00187 686 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 MAP2K7O14733 419 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 ACPPP15309 386 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 CXCR2P25025 360 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 PAFAH1B1P43034 410 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 GNG11P61952 73 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 KLC1Q07866 573 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 DSG2Q14126 1118 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 MORF4L2Q15014 288 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 PLEKHN1Q494U1 663 aaPredicted RBP13.02□□□□□ -0.33
TCOF1-215ENST00000515516 ZNF425Q6IV72 752 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 KIAA0408Q6ZU52 694 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 KLHL7Q8IXQ5 586 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 PARP9Q8IXQ6 854 aa13.02□□□□□ -0.33
TCOF1-215ENST00000515516 Q8NA96 180 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms