RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NUDT4Q9NZJ9 180 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 CD274Q9NZQ7 290 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 PILRAQ9UKJ1 303 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ZMIZ1Q9ULJ6 1067 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 KLHL20Q9Y2M5 609 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 RAXQ9Y2V3 346 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 EPG5Q9HCE0 2579 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 SDK2Q58EX2 2172 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 A0A087WV48 116 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 CDH16O75309 829 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 SCRG1O75711 98 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 OR2B3O76000 313 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 KIAA0754O94854 1291 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 SHBGP04278 402 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 NUDT17P0C025 328 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 CCNYL3P0C7X3 344 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 EZRP15311 586 aaKnown RBP13.69□□□□□ -0.22
NUP54-216ENST00000514901 IRF9Q00978 393 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 PTCHD3Q3KNS1 767 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 ZNF425Q6IV72 752 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 FBXO42Q6P3S6 717 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 C6orf15Q6UXA7 325 aaPredicted RBP13.69□□□□□ -0.22
NUP54-216ENST00000514901 PAQR7Q86WK9 346 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 KLHDC8AQ8IYD2 350 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 NLGN4XQ8N0W4 816 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 PDPRQ8NCN5 879 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 NLGN4YQ8NFZ3 816 aaPredicted RBP13.69□□□□□ -0.22
NUP54-216ENST00000514901 OR1L3Q8NH93 324 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 LRFN5Q96NI6 719 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 GPR78Q96P69 363 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 ATOH8Q96SQ7 321 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 CAPS2Q9BXY5 557 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 ROPN1BQ9BZX4 212 aaPredicted RBP13.69□□□□□ -0.22
NUP54-216ENST00000514901 ROPN1Q9HAT0 212 aaPredicted RBP13.69□□□□□ -0.22
NUP54-216ENST00000514901 SLC6A20Q9NP91 592 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 ENAMQ9NRM1 1142 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 WWOXQ9NZC7 414 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 PTBP2Q9UKA9 531 aaKnown RBP13.69□□□□□ -0.22
NUP54-216ENST00000514901 KCNE2Q9Y6J6 123 aa13.69□□□□□ -0.22
NUP54-216ENST00000514901 IGKV1-8A0A0C4DH67 115 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 NCF1BA6NI72 391 aaPredicted RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 NCF1CA8MVU1 366 aaPredicted RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 H7BY64 318 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 RAD1O60671 282 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 CTSVO60911 334 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 CPNE3O75131 537 aaKnown RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 RFPL1O75677 317 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 DLGAP3O95886 979 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 NCF1P14598 390 aaPredicted RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 GRK3P35626 688 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 SLC6A12P48065 614 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 KCNC1P48547 511 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 CCR8P51685 355 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 ST3GAL2Q16842 350 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 ZXDCQ2QGD7 858 aaPredicted RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 YOD1Q5VVQ6 348 aaPredicted RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 BROXQ5VW32 411 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 RNF44Q7L0R7 432 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 THOC6Q86W42 341 aaKnown RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 RIBC1Q8N443 379 aaPredicted RBP13.68□□□□□ -0.22
NUP54-216ENST00000514901 ABHD11Q8NFV4 315 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 PYCR2Q96C36 320 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 THAP11Q96EK4 314 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 ZNF285Q96NJ3 590 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 PRAP1Q96NZ9 151 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 ZFYVE21Q9BQ24 234 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 SELENOSQ9BQE4 189 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 SLC7A5P2Q9GIP4 190 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 IRAK4Q9NWZ3 460 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 PADI1Q9ULC6 663 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 TMCO1Q9UM00 188 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 DYRK1BQ9Y463 629 aa13.68□□□□□ -0.22
NUP54-216ENST00000514901 ADAMTS20P59510 1910 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 A0A0J9YVX5 310 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SUPT3HB4E1H0 165 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 H3BMH7 237 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 TXNDC9O14530 226 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 MAP2K7O14733 419 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 ZSCAN9O15535 394 aaPredicted RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 KLK10O43240 276 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SUPT3HO75486 399 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 STK16O75716 305 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 KLK3P07288 261 aaPredicted RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 ZNF28P17035 718 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 GMPRP36959 345 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 ARSFP54793 590 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 UCNP55089 124 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 RPS15AP62244 130 aaKnown RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 YBX1P67809 324 aaKnown RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 IFFO1Q0D2I5 559 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 ABHD18Q0P651 414 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 CLN3Q13286 438 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 GRM7Q14831 915 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 DEFB110Q30KQ9 67 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 FAM214AQ32MH5 1076 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 ADCK2Q7Z695 626 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 SPACA3Q8IXA5 215 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 CACNA2D3Q8IZS8 1091 aa13.67□□□□□ -0.22
NUP54-216ENST00000514901 PLD6Q8N2A8 252 aaKnown RBP13.67□□□□□ -0.22
NUP54-216ENST00000514901 TBC1D19Q8N5T2 526 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms