RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ADHFE1Q8IWW8 467 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 JADE3Q92613 823 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 VPS33AQ96AX1 596 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 LRRC58Q96CX6 371 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 REPS1Q96D71 796 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 TOE1Q96GM8 510 aaKnown RBP13.56□□□□□ -0.24
CLK3-204ENST00000483723 SHDQ96IW2 340 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 HHIPQ96QV1 700 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 DPY30Q9C005 99 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 OSGEPL1Q9H4B0 414 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 CLMPQ9H6B4 373 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 SPAG4Q9NPE6 437 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 SIRT5Q9NXA8 310 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 MOSPD1Q9UJG1 213 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 PACSIN3Q9UKS6 424 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 PPT2Q9UMR5 302 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 DLGAP4Q9Y2H0 992 aa13.56□□□□□ -0.24
CLK3-204ENST00000483723 LRP4O75096 1905 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 ACOT8O14734 319 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 FKBP6O75344 327 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 KRT36O76013 467 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 XRCC1P18887 633 aaPredicted RBP13.55□□□□□ -0.24
CLK3-204ENST00000483723 GCKP35557 465 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 MS4A2Q01362 244 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 PTGR1Q14914 329 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 RPE65Q16518 533 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 SPATS1Q496A3 300 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 ANO7Q6IWH7 933 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 DUS1LQ6P1R4 473 aaKnown RBP13.55□□□□□ -0.24
CLK3-204ENST00000483723 PRR23BQ6ZRT6 265 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 RNF175Q8N4F7 328 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 ABHD11Q8NFV4 315 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 HUS1BQ8NHY5 278 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 CHTF18Q8WVB6 975 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 PELI2Q9HAT8 420 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 PRDM8Q9NQV8 689 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 GPR27Q9NS67 375 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 STX18Q9P2W9 335 aaKnown RBP13.55□□□□□ -0.24
CLK3-204ENST00000483723 PNMA8BQ9ULN7 279 aaPredicted RBP13.55□□□□□ -0.24
CLK3-204ENST00000483723 CYP8B1Q9UNU6 501 aa13.55□□□□□ -0.24
CLK3-204ENST00000483723 XIRP2A4UGR9 3374 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 PIPSLA2A3N6 862 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 FAM170BA6NMN3 283 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 MAGEB17A8MXT2 336 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 ZNF217O75362 1048 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 SDC1P18827 310 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 SLC6A2P23975 617 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 CD6P30203 668 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 RABIFP47224 123 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 SLBPQ14493 270 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLK3-204ENST00000483723 HIST2H2ACQ16777 129 aaPredicted RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 SAMD4BQ5PRF9 694 aaKnown RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 HIST2H2AA3Q6FI13 130 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 NOXRED1Q6NXP6 359 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 Q6ZSR6 202 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 RIMKLAQ8IXN7 391 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 SLC15A3Q8IY34 581 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 LINC01555Q8NAE3 123 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 TSTD1Q8NFU3 115 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 OR4K1Q8NGD4 311 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 OR2L8Q8NGY9 312 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 UBE2E3Q969T4 207 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 BIRC7Q96CA5 298 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 PDXPQ96GD0 296 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 TMEM74Q96NL1 305 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 MTERF1Q99551 399 aaKnown RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 ZBTB18Q99592 522 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 NRTNQ99748 197 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 ORAI3Q9BRQ5 295 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 RAB11FIP5Q9BXF6 653 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 SPNS1Q9H2V7 528 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 NT5DC2Q9H857 520 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 TRNAU1APQ9NX07 287 aaKnown RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 ADA2Q9NZK5 511 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 SCHIP1Q9P0W5 487 aaPredicted RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 SUCOQ9UBS9 1254 aaKnown RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 RUVBL1Q9Y265 456 aaKnown RBP13.54□□□□□ -0.24
CLK3-204ENST00000483723 L3MBTL1Q9Y468 752 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 PCDHA9Q9Y5H5 950 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 HEBP2Q9Y5Z4 205 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 DGKBQ9Y6T7 804 aa13.54□□□□□ -0.24
CLK3-204ENST00000483723 PRORSD1PA6NEY8 169 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 MAP3K7O43318 606 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 PRICKLE3O43900 615 aaPredicted RBP13.53□□□□□ -0.24
CLK3-204ENST00000483723 BCAS2O75934 225 aaPredicted RBP13.53□□□□□ -0.24
CLK3-204ENST00000483723 ETHE1O95571 254 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 IL6P05231 212 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 MTHFD1P11586 935 aaKnown RBP13.53□□□□□ -0.24
CLK3-204ENST00000483723 PKLRP30613 574 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 PIK3CBP42338 1070 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 RAB28P51157 221 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 C21orf58P58505 322 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 SRP54P61011 504 aaKnown RBP13.53□□□□□ -0.24
CLK3-204ENST00000483723 ZP2Q05996 745 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 TRAP1Q12931 704 aaKnown RBP13.53□□□□□ -0.24
CLK3-204ENST00000483723 TRIM25Q14258 630 aaKnown RBP13.53□□□□□ -0.24
CLK3-204ENST00000483723 UBXN2BQ14CS0 331 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 ALG11Q2TAA5 492 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 TIGD2Q4W5G0 525 aa13.53□□□□□ -0.24
CLK3-204ENST00000483723 ADNP2Q6IQ32 1131 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms