RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 MATN2O00339 956 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 POLR3GO15318 223 aaPredicted RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CCNT2O60583 730 aaKnown RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SUPT7LO94864 414 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 ESRRBO95718 433 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 RPN2P04844 631 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 PROS1P07225 676 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 HIST1H2AGP0C0S8 130 aaPredicted RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 PRR35P0CG20 571 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SMIM10L1P0DMW3 83 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 C1GALT1C1LP0DN25 315 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CDH1P12830 882 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SLC2A4P14672 509 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 HIST1H2ADP20671 130 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SERPINB3P29508 390 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 LSP1P33241 339 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 REEP5Q00765 189 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 RELAQ04206 551 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 LCP2Q13094 533 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 STX3Q13277 289 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 KIAA0040Q15053 153 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 XKR7Q5GH72 579 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 PRAMEF13Q5VWM6 474 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CAPN13Q6MZZ7 669 aaPredicted RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 WDR74Q6RFH5 385 aaPredicted RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SPESP1Q6UW49 350 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 RNF165Q6ZSG1 346 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 USP53Q70EK8 1073 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 DGLUCYQ7Z3D6 616 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 UBE3DQ7Z6J8 389 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 B3GNT8Q7Z7M8 397 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CUZD1Q86UP6 607 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 PLD3Q8IV08 490 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 LAS2Q8IYD9 372 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SYTL1Q8IYJ3 562 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 MAGEC3Q8TD91 643 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 ATL1Q8WXF7 558 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CCDC126Q96EE4 140 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SMIM10Q96HG1 83 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SLC41A2Q96JW4 573 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 MAELQ96JY0 434 aaKnown RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 HIST1H2AHQ96KK5 128 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CNDP2Q96KP4 475 aaKnown RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 TSNARE1Q96NA8 513 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 MAP3K3Q99759 626 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 HIST1H2AJQ99878 128 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CCDC3Q9BQI4 270 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 PLCD4Q9BRC7 762 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 H2AFJQ9BTM1 129 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 ACAT2Q9BWD1 397 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 CHRNA10Q9GZZ6 450 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SEMA6CQ9H3T2 930 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SRMSQ9H3Y6 488 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 EHD1Q9H4M9 534 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 THAP1Q9NVV9 213 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 SIDT1Q9NXL6 827 aaKnown RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 NKIRAS1Q9NYS0 192 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 WWOXQ9NZC7 414 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 TIMM22Q9Y584 194 aa9.5□□□□□ -0.89
SF3A1-207ENST00000471342 TNPO3Q9Y5L0 923 aaKnown RBP9.5□□□□□ -0.89
SF3A1-207ENST00000471342 FAM186AA6NE01 2351 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 LOC105369274A0A096LPK9 316 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 LOC102723532A0A0G2JNH3 316 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 IGHV5-10-1A0A0J9YXX1 117 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 PMS2P1A4D2B8 440 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 TCP11X1B4DZS4 312 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 H0YIV9 168 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 H7BY64 318 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 GIPC1O14908 333 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 HAT1O14929 419 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 CAPN5O15484 640 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 DNAJB6O75190 326 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 LDOC1O95751 146 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 EBLN1P0CF75 366 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 JUPP14923 745 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 GRK2P25098 689 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 MAP4P27816 1152 aaKnown RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 SERPINB5P36952 375 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 BCL6P41182 706 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 SCTRP47872 440 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 PIK3CGP48736 1102 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 NEK2P51955 445 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 INHBCP55103 352 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 INSM1Q01101 510 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 MEF2AQ02078 507 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 CHIT1Q13231 466 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 HHATQ5VTY9 493 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 CLEC6AQ6EIG7 209 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 GRHL2Q6ISB3 625 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 FRA10AC1Q70Z53 315 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 RNF44Q7L0R7 432 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 PRSS42Q7Z5A4 293 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 OR4N4Q8N0Y3 316 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 CCNYL1Q8N7R7 359 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 GOLGA6L1Q8N7Z2 621 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 BMPERQ8N8U9 685 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 Q8N9G6 341 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 RFWD2Q8NHY2 731 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 IFI44Q8TCB0 444 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 RHBDD1Q8TEB9 315 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms