RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TIMMDC1Q9NPL8 285 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 FAM120CQ9NX05 1096 aaKnown RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 CXXC1Q9P0U4 656 aaPredicted RBP14.6□□□□□ -0.07
LDLR-202ENST00000455727 PCDH10Q9P2E7 1040 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 LRRK1Q38SD2 2015 aa14.6□□□□□ -0.07
LDLR-202ENST00000455727 GNGT2O14610 69 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 LRATO95237 230 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 SERPINA1P01009 418 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 CYP17A1P05093 508 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 ADH5P11766 374 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 PCSK6P29122 969 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 WEE1P30291 646 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 ST8SIA6P61647 398 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 UGT8Q16880 541 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 ZNF658BQ4V348 819 aaPredicted RBP14.59□□□□□ -0.07
LDLR-202ENST00000455727 DOK6Q6PKX4 331 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 TMEM220Q6QAJ8 160 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 OR5K1Q8NHB7 308 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 DTD2Q96FN9 168 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 OR4K3Q96R72 315 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 DDX18Q9NVP1 670 aaKnown RBP14.59□□□□□ -0.07
LDLR-202ENST00000455727 MYO1DO94832 1006 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 PRNPP04156 253 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 CEBPBP17676 345 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 GPX2P18283 190 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 IMPA1P29218 277 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 MAGEA2P43356 314 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 PREPP48147 710 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 CCR3P51677 355 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 WNT3P56703 355 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 ACSM2AQ08AH3 577 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 GRIN2CQ14957 1233 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 PLCL1Q15111 1095 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 BCL7AQ4VC05 210 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 ACSM2BQ68CK6 577 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 ARMC5Q96C12 935 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 PKP4Q99569 1192 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 AASDHPPTQ9NRN7 309 aa14.59□□□□□ -0.07
LDLR-202ENST00000455727 SAMD4AQ9UPU9 718 aaKnown RBP14.59□□□□□ -0.07
LDLR-202ENST00000455727 MAGED1Q9Y5V3 778 aaPredicted RBP14.59□□□□□ -0.07
LDLR-202ENST00000455727 CLIC1O00299 241 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 FPGTO14772 594 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 SLC16A8O95907 504 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 ADH1CP00326 375 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 MYCLP1P12525 358 aaPredicted RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 ASMTP46597 345 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 PNLIPRP1P54315 467 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 ZIK1Q3SY52 487 aaPredicted RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 ERICH5Q6P6B1 374 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 THAP5Q7Z6K1 395 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 RNF175Q8N4F7 328 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 LRRC3BQ96PB8 259 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 PANX1Q96RD7 426 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 MTERF1Q99551 399 aaKnown RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 EBPLQ9BY08 206 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 TOR3AQ9H497 397 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 FAM118AQ9NWS6 357 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 UTS2RQ9UKP6 389 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 RWDD3Q9Y3V2 267 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 GMEB1Q9Y692 573 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 TLL1O43897 1013 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 B3GALT4O96024 378 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 DCTP40126 519 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 BIRC2Q13490 618 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 CCSMST1Q4G0I0 132 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 CES5AQ6NT32 575 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 ZNF765Q7L2R6 523 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 ZNF551Q7Z340 670 aaPredicted RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 GPR155Q7Z3F1 870 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 CAMKMTQ7Z624 323 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 HIPK1Q86Z02 1210 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 OR7A2PQ8NGA2 310 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 GFM2Q969S9 779 aaKnown RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 MED8Q96G25 268 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 CNDP2Q96KP4 475 aaKnown RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 PHF12Q96QT6 1004 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 TUBA1CQ9BQE3 449 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 ZCCHC2Q9C0B9 1178 aaKnown RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 SGK2Q9HBY8 427 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 IFT80Q9P2H3 777 aaPredicted RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 FAM8A1Q9UBU6 413 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 DPP7Q9UHL4 492 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 MRPS23Q9Y3D9 190 aaKnown RBP14.58□□□□□ -0.08
LDLR-202ENST00000455727 KCNE2Q9Y6J6 123 aa14.58□□□□□ -0.08
LDLR-202ENST00000455727 NUP214P35658 2090 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 PCM1Q15154 2024 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 KPNA3O00505 521 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 EPN2O95208 641 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 COX7A2P14406 83 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 IST1P53990 364 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 VAC14Q08AM6 782 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 CAMK1Q14012 370 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 POM121L1PQ3SYA9 428 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 RBM48Q5RL73 367 aaKnown RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 C10orf62Q5T681 223 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 CPZQ66K79 652 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 C8orf59Q8N0T1 100 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 LILRA3Q8N6C8 439 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 ZNF555Q8NEP9 628 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 TMIEQ8NEW7 156 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms