RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 GDF5P43026 501 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 GCGRP47871 477 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 AGTR2P50052 363 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 ABATP80404 500 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 PCDH1Q08174 1060 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 TSNAXIP1Q2TAA8 658 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 PRAMEF13Q5VWM6 474 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 CAPN13Q6MZZ7 669 aaPredicted RBP11.93□□□□□ -0.5
USP40-205ENST00000430158 LRIG3Q6UXM1 1119 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 OR4K1Q8NGD4 311 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 USP7Q93009 1102 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 TCTN2Q96GX1 697 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 MRPL57Q9BQC6 102 aaKnown RBP11.93□□□□□ -0.5
USP40-205ENST00000430158 PLCD4Q9BRC7 762 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 DPH7Q9BTV6 452 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 DDA1Q9BW61 102 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 ZMYND15Q9H091 742 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 PCBD2Q9H0N5 130 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 CCDC177Q9NQR7 707 aaPredicted RBP11.93□□□□□ -0.5
USP40-205ENST00000430158 MKS1Q9NXB0 559 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 FOXJ2Q9P0K8 574 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 PISDQ9UG56 409 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 ACSL6Q9UKU0 697 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 RNF112Q9ULX5 631 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 PCDHGA7Q9Y5G6 932 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 B3GALT1Q9Y5Z6 326 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 PKD1L2Q7Z442 2459 aa11.93□□□□□ -0.5
USP40-205ENST00000430158 CACNA1GO43497 2377 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 NCF1BA6NI72 391 aaPredicted RBP11.92□□□□□ -0.5
USP40-205ENST00000430158 NCF1CA8MVU1 366 aaPredicted RBP11.92□□□□□ -0.5
USP40-205ENST00000430158 TNFSF15O95150 251 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 NCF1P14598 390 aaPredicted RBP11.92□□□□□ -0.5
USP40-205ENST00000430158 CREB1P16220 341 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 CMPK1P30085 196 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 CRHR1P34998 444 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 CSNK1G2P78368 415 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 FOXK2Q01167 660 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 CYP4F3Q08477 520 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 IFFO1Q0D2I5 559 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 E2F2Q14209 437 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 IL11RAQ14626 422 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 SETDB1Q15047 1291 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 GPR19Q15760 415 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 FBXO48Q5FWF7 155 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 C16orf46Q6P387 395 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 FRA10AC1Q70Z53 315 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 RNF44Q7L0R7 432 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 THOC6Q86W42 341 aaKnown RBP11.92□□□□□ -0.5
USP40-205ENST00000430158 FAM129CQ86XR2 697 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 TCAIMQ8N3R3 496 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 BANPQ8N9N5 519 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 OR1L3Q8NH93 324 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 NEIL2Q969S2 332 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 ESAMQ96AP7 390 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 NXPE2Q96DL1 559 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 MED8Q96G25 268 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 TAAR9Q96RI9 348 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 SARGQ9BW04 601 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 MRPL46Q9H2W6 279 aaKnown RBP11.92□□□□□ -0.5
USP40-205ENST00000430158 PDE7BQ9NP56 450 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 MRPS30Q9NP92 439 aaKnown RBP11.92□□□□□ -0.5
USP40-205ENST00000430158 FGF21Q9NSA1 209 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 SLC39A1Q9NY26 324 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 CD274Q9NZQ7 290 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 ANKMY1Q9P2S6 941 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 XPR1Q9UBH6 696 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 SLC22A14Q9Y267 594 aa11.92□□□□□ -0.5
USP40-205ENST00000430158 ZZEF1O43149 2961 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 LRRC14BA6NHZ5 514 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 SYCE1LA8MT33 242 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 H7BY64 318 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 AGPSO00116 658 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 STK16O75716 305 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 IPO13O94829 963 aaKnown RBP11.91□□□□□ -0.5
USP40-205ENST00000430158 CCNDBP1O95273 360 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 TIAF1O95411 115 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 PROCP04070 461 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 JMJD7P0C870 316 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 KRT15P19012 456 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 KRT4P19013 534 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 HRH2P25021 359 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 SLC5A2P31639 672 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 HSPA7P48741 367 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 ALDH18A1P54886 795 aaKnown RBP11.91□□□□□ -0.5
USP40-205ENST00000430158 ACY1Q03154 408 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 CASP8Q14790 479 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 PCBP2Q15366 365 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP40-205ENST00000430158 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP40-205ENST00000430158 KLC3Q6P597 504 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 SLCO4C1Q6ZQN7 724 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 BPHLQ86WA6 291 aaPredicted RBP11.91□□□□□ -0.5
USP40-205ENST00000430158 MCATQ8IVS2 390 aaKnown RBP11.91□□□□□ -0.5
USP40-205ENST00000430158 LSMEM2Q8N112 164 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 ARHGEF39Q8N4T4 335 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 WDR34Q96EX3 536 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 PRAP1Q96NZ9 151 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 FCRL4Q96PJ5 515 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 OR2A5Q96R48 311 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 OR6C1Q96RD1 312 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 CTRCQ99895 268 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms