RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 A0A1W2PQ45 241 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 A0A1W2PQY0 241 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 C1orf226A1L170 272 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 FADS2O95864 444 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 ENGP17813 658 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 GPX2P18283 190 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 CDH3P22223 829 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 RPIAP49247 311 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 EIF2B2P49770 351 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 MVDP53602 400 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ABHD18Q0P651 414 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 GAB1Q13480 694 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ACOX1Q15067 660 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 PTCHD3Q3KNS1 767 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 TTLL9Q3SXZ7 439 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 CACHD1Q5VU97 1274 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SERPINA11Q86U17 422 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 FAM217AQ8IXS0 508 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SYNPOQ8N3V7 929 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZNF513Q8N8E2 541 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 C2orf15Q8WU43 125 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 ASB11Q8WXH4 323 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 MAL2Q969L2 176 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SLC29A3Q9BZD2 475 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 NACA2Q9H009 215 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 IL21Q9HBE4 155 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 AASDHPPTQ9NRN7 309 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 RLIMQ9NVW2 624 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZNF232Q9UNY5 417 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SLC22A14Q9Y267 594 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 AQP9O43315 295 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 MTX2O75431 263 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZNF682O95780 498 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 VIPP01282 170 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SPNP16150 400 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 TNFRSF1BP20333 461 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 KEAP1Q14145 624 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 GGTA1PQ4G0N0 100 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZNF648Q5T619 568 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 TXNDC8Q6A555 127 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ASTLQ6HA08 431 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 RGMBQ6NW40 437 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 NOXRED1Q6NXP6 359 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZNF852Q6ZMS4 543 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 LRRC8DQ7L1W4 858 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 HIPK1Q86Z02 1210 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 CHCHD4Q8N4Q1 142 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 WDR20Q8TBZ3 569 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 OVCA2Q8WZ82 227 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 MAGED4Q96JG8 741 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 HSH2DQ96JZ2 352 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 APOLD1Q96LR9 279 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 PITX2Q99697 317 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 PSD2Q9BQI7 771 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 HTATIP2Q9BUP3 242 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ELAC1Q9H777 363 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 RASSF1Q9NS23 344 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 PNMA8BQ9ULN7 279 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 TRIM17Q9Y577 477 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 LRRK1Q38SD2 2015 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 DSCR3O14972 297 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 RECKO95980 971 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 S100BP04271 92 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 CTSAP10619 480 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 LAMP1P11279 417 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ITPKAP23677 461 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 C21orf33P30042 268 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 S100A3P33764 101 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SMAD3P84022 425 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 LMAN2Q12907 356 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 DGCR6Q14129 220 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 HIST2H2ACQ16777 129 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 VMACQ2NL98 169 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 LRRC66Q68CR7 880 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZCCHC8Q6NZY4 707 aaKnown RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 UTS2BQ765I0 119 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 LILRA3Q8N6C8 439 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 ARL14EPQ8N8R7 260 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 LMNTD1Q8N9Z9 388 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 SELENOMQ8WWX9 145 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 OR4K3Q96R72 315 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZBTB18Q99592 522 aa9.56□□□□□ -0.88
SS18-203ENST00000415083 ZBTB20Q9HC78 741 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 PDP1Q9P0J1 537 aaPredicted RBP9.56□□□□□ -0.88
SS18-203ENST00000415083 C16orf96A6NNT2 1141 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 E2F6O75461 281 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 KDELR2P33947 212 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 EPS8Q12929 822 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 MAD2L1Q13257 205 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 IL18R1Q13478 541 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 PAGE2BQ5JRK9 111 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 PDE12Q6L8Q7 609 aaKnown RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 ZNF783Q6ZMS7 281 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 CBLL1Q75N03 491 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 TMCO2Q7Z6W1 182 aaPredicted RBP9.55□□□□□ -0.88
SS18-203ENST00000415083 DCAF4L2Q8NA75 395 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 ABHD8Q96I13 439 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 YIPF2Q9BWQ6 316 aa9.55□□□□□ -0.88
SS18-203ENST00000415083 BBS2Q9BXC9 721 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms