RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZFYVE21Q9BQ24 234 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 SELENOSQ9BQE4 189 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 UNKQ9C0B0 810 aaKnown RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 SLC7A5P2Q9GIP4 190 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 GPN2Q9H9Y4 310 aaPredicted RBP20.82■□□□□ 0.92
CLN3-207ENST00000395653 IRAK4Q9NWZ3 460 aa20.82■□□□□ 0.92
CLN3-207ENST00000395653 EXOC1LA0A1B0GW35 172 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 NRP2O60462 931 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 KLK3P07288 261 aaPredicted RBP20.81■□□□□ 0.92
CLN3-207ENST00000395653 CTSBP07858 339 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 CNTFP26441 200 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 HNMTP50135 292 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 SERPINB8P50452 374 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 TGFBIQ15582 683 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 DSELQ8IZU8 1212 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 HAUS8Q9BT25 410 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 NMRAL1Q9HBL8 299 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 PCMTD2Q9NV79 361 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 CUEDC1Q9NWM3 386 aaPredicted RBP20.81■□□□□ 0.92
CLN3-207ENST00000395653 SRPK3Q9UPE1 567 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 ACOT9Q9Y305 439 aa20.81■□□□□ 0.92
CLN3-207ENST00000395653 PCM1Q15154 2024 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 A0A087X1B8 175 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 A0A0J9YVX5 310 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 POC1B-GALNT4F8VUJ3 575 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 MEN1O00255 615 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 TERTO14746 1132 aaKnown RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 KRT38O76015 456 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 ALDOAP04075 364 aaKnown RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 C2P06681 752 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 EZRP15311 586 aaKnown RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 TAF1BQ53T94 588 aaPredicted RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 CDKL4Q5MAI5 379 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 RHBDD2Q6NTF9 364 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 FBXO42Q6P3S6 717 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 C17orf64Q86WR6 236 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 ZNF655Q8N720 491 aaPredicted RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 DCAKDQ8WVC6 231 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 ISL2Q96A47 359 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 KIAA1191Q96A73 305 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 ALKBH8Q96BT7 664 aaKnown RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 PTERQ96BW5 349 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 PYCR2Q96C36 320 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 SLC45A3Q96JT2 553 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 EGFL8Q99944 293 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 DPH2Q9BQC3 489 aaPredicted RBP20.8■□□□□ 0.92
CLN3-207ENST00000395653 TMEM184CQ9NVA4 438 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 CROTQ9UKG9 612 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 TLK1Q9UKI8 766 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 LHX6Q9UPM6 363 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 PCDHGA4Q9Y5G9 962 aa20.8■□□□□ 0.92
CLN3-207ENST00000395653 C21orf140B9A014 251 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 LTA4HP09960 611 aaKnown RBP20.79■□□□□ 0.92
CLN3-207ENST00000395653 NPPBP16860 134 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 WT1P19544 449 aaPredicted RBP20.79■□□□□ 0.92
CLN3-207ENST00000395653 TYK2P29597 1187 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 DLSTP36957 453 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 GCGRP47871 477 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 DLG1Q12959 904 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 ARHGAP40Q5TG30 622 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 FRMPD2BQ6IN97 320 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 GPR155Q7Z3F1 870 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 ADCK2Q7Z695 626 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 GPSM1Q86YR5 675 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 ZSCAN1Q8NBB4 408 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 MR1Q95460 341 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 NDC1Q9BTX1 674 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 DHRS4Q9BTZ2 278 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 FAM117AQ9C073 453 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 EPB41L4BQ9H329 900 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 AKIRIN1Q9H9L7 192 aaPredicted RBP20.79■□□□□ 0.92
CLN3-207ENST00000395653 IGSF5Q9NSI5 407 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 KCND3Q9UK17 655 aa20.79■□□□□ 0.92
CLN3-207ENST00000395653 CCDC189A1A4V9 331 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 FITM1A5D6W6 292 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 H7BY64 318 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 TCN2P20062 427 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 GMPRP36959 345 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 MAGEA12P43365 314 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 ARSFP54793 590 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 VSX2P58304 361 aaPredicted RBP20.78■□□□□ 0.92
CLN3-207ENST00000395653 SLC29A2Q14542 456 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 GRM7Q14831 915 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 OR4D1Q15615 310 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 YOD1Q5VVQ6 348 aaPredicted RBP20.78■□□□□ 0.92
CLN3-207ENST00000395653 ZNF385CQ66K41 422 aaPredicted RBP20.78■□□□□ 0.92
CLN3-207ENST00000395653 CENPLQ8N0S6 344 aaPredicted RBP20.78■□□□□ 0.92
CLN3-207ENST00000395653 TCAIMQ8N3R3 496 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 STAG3L4Q8TBR4 150 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 PROKR1Q8TCW9 393 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 CT55Q8WUE5 264 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 RHBDF1Q96CC6 855 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 PRAP1Q96NZ9 151 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 OR4K3Q96R72 315 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 FETUBQ9UGM5 382 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 IL17BQ9UHF5 180 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 SH2B3Q9UQQ2 575 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 SPTBP11277 2137 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 ANKRD12Q6UB98 2062 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 A0A096LPK6 155 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms