RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ARSGQ96EG1 525 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TIPINQ9BVW5 301 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KCNIP2Q9NS61 270 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZIM2Q9NZV7 527 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PUS1Q9Y606 427 aaKnown RBP eCLIP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 WASH4PA8MWX3 477 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 UBE2Q2LH0YL09 131 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SNAP23O00161 211 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NRP1O14786 923 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PER1O15534 1290 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GMDSO60547 372 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 REM1O75628 298 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CRTAPO75718 401 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CLPXO76031 633 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GCP02774 474 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FAM228BP0C875 321 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TUBP50607 506 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 BLKP51451 505 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PTTG1IPP53801 180 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 BCAT1P54687 386 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GALCP54803 685 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TCTN1Q2MV58 587 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 OTOP2Q7RTS6 562 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NRARPQ7Z6K4 114 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GPR149Q86SP6 731 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 UNC5BQ8IZJ1 945 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FTMTQ8N4E7 242 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 BEND7Q8N7W2 519 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MFSD2AQ8NA29 543 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 OR52J3Q8NH60 311 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF398Q8TD17 642 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CCDC107Q8WV48 283 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 LCN9Q8WX39 176 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 HDAC2Q92769 488 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SEC22AQ96IW7 307 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MSLNLQ96KJ4 702 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MFSD14AQ96MC6 490 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CMTM3Q96MX0 182 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CASD1Q96PB1 797 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 C7orf50Q9BRJ6 194 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHAC1Q9H158 963 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SRMSQ9H3Y6 488 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CLEC5AQ9NY25 188 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NCKIPSDQ9NZQ3 722 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM216Q9P0N5 145 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 DRG1Q9Y295 367 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 WDR45Q9Y484 360 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FXYD6-FXYD2A0A087WZ82 144 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NEMP2A6NFY4 417 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SUSD5O60279 629 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KNG1P01042 644 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF8P17098 575 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CTPS1P17812 591 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SMSP52788 366 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RAB8AP61006 207 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CSTF1Q05048 431 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ILF2Q12905 390 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ENPP2Q13822 863 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PDGFRLQ15198 375 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MYLK3Q32MK0 819 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CHRFAM7AQ494W8 412 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 DNM1P34Q6PK57 102 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NXPE4Q6UWF7 544 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FAM217AQ8IXS0 508 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 HORMAD2Q8N7B1 307 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 AMER2Q8N7J2 671 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 IL17RCQ8NAC3 791 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 OR14K1Q8NGZ2 314 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GRPEL2Q8TAA5 225 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FEZF2Q8TBJ5 459 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CHTF18Q8WVB6 975 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PPCDCQ96CD2 204 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KCNJ15Q99712 375 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FXYD6Q9H0Q3 95 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CA10Q9NS85 328 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 AP5S1Q9NUS5 200 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 DNAJB4Q9UDY4 337 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MAP4K5Q9Y4K4 846 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 A8MVM7 634 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ABLIM1O14639 778 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 UBDO15205 165 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RPLP0P05388 317 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SLC35G6P0C7Q6 338 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF44P15621 663 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RAD52P43351 418 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CHRNA4P43681 627 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CRADDP78560 199 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SCARF1Q14162 830 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RCAN2Q14206 197 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GRB7Q14451 532 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF268Q14587 947 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ATXN7L3Q14CW9 347 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GRIK5Q16478 980 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CDKAL1Q5VV42 579 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 C17orf64Q86WR6 236 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GPR65Q8IYL9 337 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SCCPDHQ8NBX0 429 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RPLP0P6Q8NHW5 317 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TPCN2Q8NHX9 752 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms