RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TEAD1P28347 426 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ERVPABLB-1P60509 514 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 PLOD1Q02809 727 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 ACTN3Q08043 901 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 RPA4Q13156 261 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 SLC9A5Q14940 896 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 TMEM198Q66K66 360 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 GPRIN3Q6ZVF9 776 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 SLC22A9Q8IVM8 553 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 AVL9Q8NBF6 648 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 RHEBL1Q8TAI7 183 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 CEP76Q8TAP6 659 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 DTX3LQ8TDB6 740 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 CHMP6Q96FZ7 201 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 GSTO2Q9H4Y5 243 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ELOVL6Q9H5J4 265 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 KIR3DX1Q9H7L2 352 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 MRPS30Q9NP92 439 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 SPAARA0A1B0GVQ0 90 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 KLHL33A6NCF5 533 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ZNF860A6NHJ4 632 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 RTCAO00442 366 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 PROS1P07225 676 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 RETP07949 1114 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 CHRM5P08912 532 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 PLA2G16P53816 162 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 DOC2AQ14183 400 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 RCN2Q14257 317 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 IMPG1Q17R60 797 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ZNF528Q3MIS6 628 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 C6orf132Q5T0Z8 1188 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 KIAA1614Q5VZ46 1190 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 NUDT8Q8WV74 236 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 CNDP2Q96KP4 475 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 MAGEB18Q96M61 343 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ZNF317Q96PQ6 595 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 C19orf43Q9BQ61 176 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 CCDC3Q9BQI4 270 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ILKAPQ9H0C8 392 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 SLC32A1Q9H598 525 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 TMEM9BQ9NQ34 198 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 DSPP15924 2871 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 PRAMEF4O60810 478 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 HGFP14210 728 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 NPPBP16860 134 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 AP1S2P56377 157 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 NFKB2Q00653 900 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 CDC16Q13042 620 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 PRAMEF9Q5VWM5 478 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 LAIR1Q6GTX8 287 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 SLC23A3Q6PIS1 610 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ARL10Q8N8L6 244 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 SELENOMQ8WWX9 145 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 SMPDL3AQ92484 453 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ITFG2Q969R8 447 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 TUBGCP3Q96CW5 907 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 PDLIM5Q96HC4 596 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 YIPF2Q9BWQ6 316 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 SORBS1Q9BX66 1292 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 RHBGQ9H310 441 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 OR51B5Q9H339 312 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 ACTR5Q9H9F9 607 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 ACTR10Q9NZ32 417 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 PTBP2Q9UKA9 531 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 ZNF106Q9H2Y7 1883 aaKnown RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 NBASA2RRP1 2371 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 A6NCN8 305 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 ZW10O43264 779 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 HCRTR1O43613 425 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 DHRS4L1P0CG22 281 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 ST6GAL1P15907 406 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 GNAZP19086 355 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 DRD4P21917 467 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 SLC26A3P40879 764 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 RAB8AP61006 207 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 LCP2Q13094 533 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 ZRSR2Q15696 482 aaKnown RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 ZNF658BQ4V348 819 aaPredicted RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 DHRS13Q6UX07 377 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 UNC5DQ6UXZ4 953 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 OOSP2Q86WS3 158 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 PRSS58Q8IYP2 241 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 LSMEM2Q8N112 164 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 IFI44Q8TCB0 444 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 ATL1Q8WXF7 558 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 SCARF2Q96GP6 870 aaPredicted RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 CTRCQ99895 268 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 EBPLQ9BY08 206 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 SLC12A4Q9UP95 1085 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 TRAF6Q9Y4K3 522 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 DNMT3AQ9Y6K1 912 aaPredicted RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 ZFHX4Q86UP3 3567 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 KIR2DS5A0A0G2JLQ3 304 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 A0A0G2JNG1 304 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 MYOCOSA0A1B0GUC4 107 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 KIR2DS3K7RE56 304 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 OR7A17O14581 309 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 PIP5K1BO14986 540 aa8.87□□□□□ -0.99
USP4-202ENST00000351842 HOXC4P09017 264 aaPredicted RBP8.87□□□□□ -0.99
USP4-202ENST00000351842 GIMD1P0DJR0 217 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms