RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CPNE9Q8IYJ1 553 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 SLC15A4Q8N697 577 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 SPERTQ8NA61 448 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 TSEN15Q8WW01 171 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 SMG7Q92540 1137 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 NDOR1Q9UHB4 597 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 OR10H1Q9Y4A9 318 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 DAPL1A0PJW8 107 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 GSTT2P0CG29 244 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 LAMP2P13473 410 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 CPN2P22792 545 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 S100GP29377 79 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 MAGEA12P43365 314 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 ATP4BP51164 291 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 GAD2Q05329 585 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 LAPTM5Q13571 262 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 LARS2Q15031 903 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 TAF1AQ15573 450 aaPredicted RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 C4orf46Q504U0 113 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 RABL3Q5HYI8 236 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 OR52E8Q6IFG1 317 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 RAB12Q6IQ22 244 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 EIF5AL1Q6IS14 154 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 SERPINA9Q86WD7 417 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 PLCZ1Q86YW0 608 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 PYURFQ96I23 114 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 EBPLQ9BY08 206 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 RSPH9Q9H1X1 276 aaPredicted RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 ELAC1Q9H777 363 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 TMEM27Q9HBJ8 222 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 MTMR10Q9NXD2 777 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 ZNF69Q9UC07 566 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 RIMKLBQ9ULI2 386 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 STRCP1A6NGW2 1772 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 OR7A10O76100 309 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 NPPAP01160 153 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 PRH1P02810 166 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 HLA-DPB1P04440 258 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 NPR2P20594 1047 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 HTR2BP41595 481 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 CBX5P45973 191 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 TXNL4AP83876 142 aaKnown RBP11.22□□□□□ -0.61
VPS39-201ENST00000318006 CHIT1Q13231 466 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 SLC2A7Q6PXP3 512 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 DENND1AQ8TEH3 1009 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 FAM129BQ96TA1 746 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 DUSP26Q9BV47 211 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 TLE6Q9H808 572 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 SMURF2Q9HAU4 748 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 CDC14AQ9UNH5 594 aa11.22□□□□□ -0.61
VPS39-201ENST00000318006 ISM1B1AKI9 464 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 HCRTO43612 131 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 HLA-DQB2P05538 268 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 PROZP22891 400 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 F8A1P23610 371 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 PPP5CP53041 499 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 RPS3AP61247 264 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 HAGHLQ6PII5 290 aaPredicted RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 SLC30A8Q8IWU4 369 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 CFAP206Q8IYR0 622 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 C15orf40Q8WUR7 153 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 KAT2AQ92830 837 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 LGALS12Q96DT0 336 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 RNF31Q96EP0 1072 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 GPR22Q99680 433 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 XYLT2Q9H1B5 865 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 RANBP3Q9H6Z4 567 aaPredicted RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 NECTIN3Q9NQS3 549 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 ANXA2P2A6NMY6 339 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 NFATC1O95644 943 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 OAS1P00973 400 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 ANXA2P07355 339 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 ARCN1P48444 511 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 RPS24P62847 133 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 KCNAB2Q13303 367 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 TCEA2Q15560 299 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 ZC3HC1Q86WB0 502 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 C17orf64Q86WR6 236 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 CHST4Q8NCG5 386 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 CNDP2Q96KP4 475 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 FIZ1Q96SL8 496 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 TCF7L1Q9HCS4 588 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 FNIP2Q9P278 1114 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 URADA6NGE7 173 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 RFPL1O75677 317 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 SIX3O95343 332 aaPredicted RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 HPRP00739 348 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 PRNPP04156 253 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 GNAO1P09471 354 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 PRKACGP22612 351 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 ZNF132P52740 706 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 TSPAN5P62079 268 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 PRAMEF17Q5VTA0 474 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 TPGS2Q68CL5 300 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 FBXL22Q6P050 247 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 BEND7Q8N7W2 519 aaPredicted RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 ANKFN1Q8N957 763 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 ZNF248Q8NDW4 579 aa11.21□□□□□ -0.61
VPS39-201ENST00000318006 SRFBP1Q8NEF9 429 aaKnown RBP11.21□□□□□ -0.61
VPS39-201ENST00000318006 C1orf216Q8TAB5 229 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms