RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FASTKD3Q14CZ7 662 aaKnown RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 TAF5Q15542 800 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 LRRC56Q8IYG6 542 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 HJURPQ8NCD3 748 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-201ENST00000303395 C1orf216Q8TAB5 229 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 CHAC2Q8WUX2 184 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 MAFIPQ8WZ33 124 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ABCB9Q9NP78 766 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 PXMP2Q9NR77 195 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 AGPAT4Q9NRZ5 378 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 LIPT1Q9Y234 373 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 AXIN2Q9Y2T1 843 aa5.13□□□□□ -1.59
SCN1A-201ENST00000303395 ARFGEF2Q9Y6D5 1785 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 A0A087WWV3 80 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 WDR27A2RRH5 827 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 BLACEA4D250 179 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 BET1O15155 118 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 MATN3O15232 486 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CLN5O75503 358 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 RGS11O94810 467 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 MAP3K6O95382 1288 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 RAB36O95755 333 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 GNB3P16520 340 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 POU3F3P20264 500 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 LEPRP48357 1165 aaKnown RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PGM5Q15124 567 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF772Q68DY9 489 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 RANBP3LQ86VV4 465 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CNTN4Q8IWV2 1026 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CRYBG2Q8N1P7 616 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 OR6J1Q8NGC5 347 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 DNAJB14Q8TBM8 379 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 KIAA1191Q96A73 305 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 QRSL1Q9H0R6 528 aaKnown RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ANKRD19PQ9H560 264 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ABCB10Q9NRK6 738 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CACFD1Q9UGQ2 172 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PKD1L3Q7Z443 1732 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 C2orf72A6NCS6 295 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 SLC15A5A6NIM6 579 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 MT-ND1P03886 318 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CSN2P05814 226 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 URODP06132 367 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 NDUFS1P28331 727 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 TGFB2P61812 414 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 VMACQ2NL98 169 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ANKDD1AQ495B1 522 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 SETMARQ53H47 684 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 GCNT6Q5T4J0 391 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CPTPQ5TA50 214 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 SH3PXD2AQ5TCZ1 1133 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 RPL22L1Q6P5R6 122 aaKnown RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CATSPERGQ6ZRH7 1159 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 SSX6Q7RTT6 188 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 OR13J1Q8NGT2 312 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PIH1D2Q8WWB5 315 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 OIT3Q8WWZ8 545 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 METTL21AQ8WXB1 218 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 S100PBPQ96BU1 408 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 LIN37Q96GY3 246 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 DIRAS2Q96HU8 199 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 BTN2A3PQ96KV6 586 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 KLHL5Q96PQ7 755 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PCDHB18PQ96TA0 734 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CTRCQ99895 268 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF350Q9GZX5 532 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 MKRN2Q9H000 416 aaKnown RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 KCNH6Q9H252 994 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 TNKS2Q9H2K2 1166 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ADAM7Q9H2U9 754 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 C11orf49Q9H6J7 331 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 LRTM1Q9HBL6 345 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 GLTPQ9NZD2 209 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PGAP2Q9UHJ9 254 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 TMEM14AQ9Y6G1 99 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 RP2O75695 350 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 S100PP25815 95 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 EPHA5P54756 1037 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 TAS2R31P59538 309 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 MRPS5P82675 430 aaKnown RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 APOFQ13790 326 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 NPY5RQ15761 445 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 REP15Q6BDI9 236 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 C3P1Q6ZMU1 363 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 RD3Q7Z3Z2 195 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 TMPRSS11BQ86T26 416 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CARM1Q86X55 608 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 VWA5B2Q8N398 1253 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 KLHL36Q8N4N3 616 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PNLDC1Q8NA58 520 aaKnown RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PIGXQ8TBF5 258 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 SNX33Q8WV41 574 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 KAT5Q92993 513 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 NXPE2Q96DL1 559 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 GIMAP5Q96F15 307 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 EPYCQ99645 322 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 PLCXD1Q9NUJ7 323 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 DHRS7Q9Y394 339 aa5.12□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF142P52746 1687 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-201ENST00000303395 CHD3Q12873 2000 aaKnown RBP5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms