RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SPTBN5Q9NRC6 3674 aaKnown RBP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 ACOT8O14734 319 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 MAP3K7O43318 606 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 BCKDHAP12694 445 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 ACPPP15309 386 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 GABRG2P18507 467 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 RPL10P27635 214 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 ACSL1P33121 698 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 CAPRIN1Q14444 709 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 TRIM69Q86WT6 500 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 GLB1L3Q8NCI6 653 aaPredicted RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 DENND6BQ8NEG7 585 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 TRIT1Q9H3H1 467 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 OSGEPL1Q9H4B0 414 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 AASDHPPTQ9NRN7 309 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 PLAGL1Q9UM63 463 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 NDRG2Q9UN36 371 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 CFAP20Q9Y6A4 193 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 MYO10Q9HD67 2058 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 hCG_2014768A0A024R1R8 64 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 PI15O43692 258 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 PRPS2P11908 318 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 HSD3B1P14060 373 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 HSD3B2P26439 372 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 TRIM25Q14258 630 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 PYCR3Q53H96 274 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 CAPRIN2Q6IMN6 1127 aaKnown RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 FAM9CQ8IZT9 166 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 RNF175Q8N4F7 328 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 LMNTD1Q8N9Z9 388 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 BHLHE22Q8NFJ8 381 aaPredicted RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 WDR34Q96EX3 536 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 APIPQ96GX9 242 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 IL17FQ96PD4 163 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 BTBD1Q9H0C5 482 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 SPATA6Q9NWH7 488 aaPredicted RBP13.78□□□□□ -0.2
C9orf3-202ENST00000297979 MOSPD1Q9UJG1 213 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 SH2B3Q9UQQ2 575 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 DLGAP4Q9Y2H0 992 aa13.78□□□□□ -0.2
C9orf3-202ENST00000297979 NME4O00746 187 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 KCNJ13O60928 360 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 NPPAP01160 153 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 AMD1P17707 334 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 CD53P19397 219 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 SLC6A2P23975 617 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 TDGQ13569 410 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 DDX39BQ13838 428 aaKnown RBP13.77□□□□□ -0.2
C9orf3-202ENST00000297979 ARHGAP19Q14CB8 494 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 SMAD2Q15796 467 aaKnown RBP13.77□□□□□ -0.2
C9orf3-202ENST00000297979 THEMIS2Q5TEJ8 643 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 ATG9BQ674R7 924 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 MED27Q6P2C8 311 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 SLC2A7Q6PXP3 512 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 DPP10Q8N608 796 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 OR2T34Q8NGX1 318 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 REPS1Q96D71 796 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 MTERF1Q99551 399 aaKnown RBP13.77□□□□□ -0.2
C9orf3-202ENST00000297979 EFCAB11Q9BUY7 163 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 EHD1Q9H4M9 534 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 BRF2Q9HAW0 419 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 VPS29Q9UBQ0 182 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 KCNK6Q9Y257 313 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 EYSQ5T1H1 3165 aa13.77□□□□□ -0.2
C9orf3-202ENST00000297979 LRRC72A6NJI9 287 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 BAG2O95816 211 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 HOXC4P09017 264 aaPredicted RBP13.77□□□□□ -0.21
C9orf3-202ENST00000297979 ERGP11308 486 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 PCSK2P16519 638 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 HSD17B2P37059 387 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 DGKQP52824 942 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 KIAA1024LP59773 190 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 PRAMEF14Q5SWL7 426 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 CATSPEREQ5SY80 951 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 PRAMEF13Q5VWM6 474 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 LRRC74BQ6ZQY2 392 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 SLC15A3Q8IY34 581 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 TBC1D21Q8IYX1 336 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 TMCO5AQ8N6Q1 288 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 OR7G3Q8NG95 312 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 SETD7Q8WTS6 366 aaKnown RBP13.77□□□□□ -0.21
C9orf3-202ENST00000297979 SLC5A11Q8WWX8 675 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 APOLD1Q96LR9 279 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 CLMPQ9H6B4 373 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 WDR37Q9Y2I8 494 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 GPSM3Q9Y4H4 160 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 FPGTO14772 594 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 LATO43561 262 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 RPSAP08865 295 aaKnown RBP13.77□□□□□ -0.21
C9orf3-202ENST00000297979 C1GALT1C1LP0DN25 315 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 PCNAP12004 261 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 CLDN2P57739 230 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 TRAP1Q12931 704 aaKnown RBP13.77□□□□□ -0.21
C9orf3-202ENST00000297979 PAGE2BQ5JRK9 111 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 LCTLQ6UWM7 567 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 DHDDSQ86SQ9 333 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 CLHC1Q8NHS4 586 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 HMGB4Q8WW32 186 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 SCARF2Q96GP6 870 aaPredicted RBP13.77□□□□□ -0.21
C9orf3-202ENST00000297979 C12orf66Q96MD2 445 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 SH3GL1Q99961 368 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms