RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TAB1Q15750 504 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NPTX1Q15818 432 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ZNF74Q16587 644 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ODF4Q2M2E3 257 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 VWC2Q2TAL6 325 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HLA-BQ31612 363 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MOGAT2Q3SYC2 334 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GPR33Q49SQ1 333 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ASPRV1Q53RT3 343 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GORABQ5T7V8 394 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 OLFML2AQ68BL7 652 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HAUS3Q68CZ6 603 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FAAH2Q6GMR7 532 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CCDC70Q6NSX1 233 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 UGT3A1Q6NUS8 523 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 BAIAP2L2Q6UXY1 529 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FRRS1Q6ZNA5 592 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GDPGP1Q6ZNW5 385 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NUP54Q7Z3B4 507 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ANKRD33Q7Z3H0 272 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PTAR1Q7Z6K3 402 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 CARM1Q86X55 608 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NUDT13Q86X67 352 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HOGA1Q86XE5 327 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PHC2Q8IXK0 858 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CFAP206Q8IYR0 622 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 LSMEM2Q8N112 164 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ABHD12Q8N2K0 398 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FBXO39Q8N4B4 442 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 DNAJC22Q8N4W6 341 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 KLHDC1Q8N7A1 406 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PDILTQ8N807 584 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TEX19Q8NA77 164 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 XXYLT1Q8NBI6 393 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 KLHL30-AS1Q8NEE0 82 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 OR10G8Q8NGN5 311 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 VANGL1Q8TAA9 524 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 MIPOL1Q8TD10 442 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SSMEM1Q8WWF3 244 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PRPF31Q8WWY3 499 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 POMGNT1Q8WZA1 660 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 LPGAT1Q92604 370 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HDAC2Q92769 488 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 C11orf52Q96A22 123 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TMEM143Q96AN5 459 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SKA1Q96BD8 255 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TMCO6Q96DC7 493 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MTERF3Q96E29 417 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ARSGQ96EG1 525 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CNRIP1Q96F85 164 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 ZNF486Q96H40 463 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 LINC00615Q96LM1 132 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 C4orf45Q96LM5 186 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 C2orf48Q96LS8 159 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ZNF830Q96NB3 372 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 LRRC3BQ96PB8 259 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MS4A10Q96PG2 267 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GAL3ST4Q96RP7 486 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NUDCD1Q96RS6 583 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ABHD1Q96SE0 405 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CDRT15Q96T59 188 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 RAD9AQ99638 391 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SDHCQ99643 169 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 BARD1Q99728 777 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 MAP3K3Q99759 626 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CCDC3Q9BQI4 270 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ZNF577Q9BSK1 485 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PI4K2AQ9BTU6 479 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CCDC28BQ9BUN5 200 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NUP85Q9BW27 656 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SCRT1Q9BWW7 348 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MRPL1Q9BYD6 325 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 GPR88Q9GZN0 384 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 DNAI2Q9GZS0 605 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 UPF3AQ9H1J1 476 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 WNT5BQ9H1J7 359 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 P2RY12Q9H244 342 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PDCL3Q9H2J4 239 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PARLQ9H300 379 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MMP27Q9H306 513 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SH2D4AQ9H788 454 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TLE6Q9H808 572 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ANKZF1Q9H8Y5 726 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MED20Q9H944 212 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CHMP1AQ9HD42 196 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 PDE7BQ9NP56 450 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MYOZ2Q9NPC6 264 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MYNNQ9NPC7 610 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SLC35C2Q9NQQ7 365 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SERINC1Q9NRX5 453 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TNFRSF19Q9NS68 423 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GKN1Q9NS71 199 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FAM207AQ9NSI2 230 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 OLAHQ9NV23 265 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PANK4Q9NVE7 773 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SPHK1Q9NYA1 384 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PSD3Q9NYI0 1048 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GDE1Q9NZC3 331 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 OR6C2Q9NZP2 312 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 THAP10Q9P2Z0 257 aaPredicted RBP0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms