RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 OR2A1Q8NGT9 310 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 PIWIL2Q8TC59 973 aaKnown RBP10.37□□□□□ -0.75
SS18-213ENST00000579640 JPH3Q8WXH2 748 aaPredicted RBP10.37□□□□□ -0.75
SS18-213ENST00000579640 NAT6Q93015 286 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 WDR34Q96EX3 536 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 FAR2Q96K12 515 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 EDEM2Q9BV94 578 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 TBC1D10AQ9BXI6 508 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 EPN3Q9H201 632 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 ZNF395Q9H8N7 513 aaPredicted RBP10.37□□□□□ -0.75
SS18-213ENST00000579640 ACTR8Q9H981 624 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 PELI2Q9HAT8 420 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 TMEM9BQ9NQ34 198 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 ABCF3Q9NUQ8 709 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 FAM86C1Q9NVL1 165 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 HRASLS2Q9NWW9 162 aa10.37□□□□□ -0.75
SS18-213ENST00000579640 EME2A4GXA9 379 aaPredicted RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 ISM1B1AKI9 464 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 PROB1E7EW31 1015 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 HGSO14964 777 aaPredicted RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 CRCPO75575 148 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 PROS1P07225 676 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 MPSTP25325 297 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 CMPK1P30085 196 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 PEBP1P30086 187 aaKnown RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 ARL1P40616 181 aaPredicted RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 HNF4AP41235 474 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ERVPABLB-1P60509 514 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 GPLD1P80108 840 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 IRF8Q02556 426 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 CHIT1Q13231 466 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 LAPTM5Q13571 262 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 SLC5A12Q1EHB4 618 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 SH2D4BQ5SQS7 431 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ATG9BQ674R7 924 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ATG14Q6ZNE5 492 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 EFL1Q7Z2Z2 1120 aaKnown RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 SYVN1Q86TM6 617 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 WDR75Q8IWA0 830 aaKnown RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 CLYBLQ8N0X4 340 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ZNF781Q8N8C0 355 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 L3MBTL4Q8NA19 623 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 OR4F6Q8NGB9 312 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 NEIL2Q969S2 332 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 PTCD3Q96EY7 689 aaKnown RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 NRTNQ99748 197 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 SIKE1Q9BRV8 207 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 EFCAB11Q9BUY7 163 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 SLC29A3Q9BZD2 475 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 RAB33BQ9H082 229 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 FGFR1OP2Q9NVK5 253 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 SPHK1Q9NYA1 384 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 KCNK4Q9NYG8 393 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ACTR10Q9NZ32 417 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ZDHHC2Q9UIJ5 367 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 TRAF6Q9Y4K3 522 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 PCM1Q15154 2024 aa10.36□□□□□ -0.75
SS18-213ENST00000579640 ARID1BQ8NFD5 2236 aaPredicted RBP10.36□□□□□ -0.75
SS18-213ENST00000579640 GSAPA4D1B5 854 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 E7EQ34 232 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 PPP6CO00743 305 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 CDX4O14627 284 aaPredicted RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 AZIN1O14977 448 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 WFS1O76024 890 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 C1GALT1C1LP0DN25 315 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 TROVE2P10155 538 aaKnown RBP eCLIP10.35□□□□□ -0.75
SS18-213ENST00000579640 UROSP10746 265 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 CKMT1AP12532 417 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 HGFP14210 728 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 POLR2CP19387 275 aaPredicted RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 CXCR2P25025 360 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 CAPZBP47756 277 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 SEC24CP53992 1094 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 SF1Q15637 639 aaKnown RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 PROX2Q3B8N5 592 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 XKR6Q5GH73 641 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 PAGE2BQ5JRK9 111 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 GRHL2Q6ISB3 625 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 NXPE4Q6UWF7 544 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 SLCO4C1Q6ZQN7 724 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 CPLX4Q7Z7G2 160 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 TMPRSS11BQ86T26 416 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 ZNF761Q86XN6 746 aaPredicted RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 ABHD11Q8NFV4 315 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 OR2L3Q8NG85 312 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 OR10G6Q8NH81 332 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 UBE2E3Q969T4 207 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 ACAT2Q9BWD1 397 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 PITHD1Q9GZP4 211 aaPredicted RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 MRPS30Q9NP92 439 aaKnown RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 PSD3Q9NYI0 1048 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 ANKMY1Q9P2S6 941 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 VTI1BQ9UEU0 232 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 ZNF225Q9UK10 706 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 GPR179Q6PRD1 2367 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 COL5A1P20908 1838 aaPredicted RBP10.35□□□□□ -0.75
SS18-213ENST00000579640 LY6G6EA0A0G2JKS1 128 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 DUX1O43812 170 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 OR4F21O95013 312 aa10.35□□□□□ -0.75
SS18-213ENST00000579640 CHEK2O96017 543 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms