RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C1orf189Q5VU69 101 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 RHBDD2Q6NTF9 364 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 FBXO42Q6P3S6 717 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 TLDC1Q6P9B6 456 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 ZDHHC24Q6UX98 284 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 CAPN12Q6ZSI9 719 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 STRA8Q7Z7C7 330 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 PALM2Q8IXS6 379 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 ENDOVQ8N8Q3 282 aaKnown RBP14.42□□□□□ -0.1
VPS39-210ENST00000568357 PYROXD1Q8WU10 500 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 DPH7Q9BTV6 452 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 NLNQ9BYT8 704 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 SLC6A20Q9NP91 592 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 STARD5Q9NSY2 213 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 ZFATQ9P243 1243 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 ANKMY1Q9P2S6 941 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 DHCR7Q9UBM7 475 aaKnown RBP14.42□□□□□ -0.1
VPS39-210ENST00000568357 PDE10AQ9Y233 779 aa14.42□□□□□ -0.1
VPS39-210ENST00000568357 LOC105369274A0A096LPK9 316 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 IGKV1-8A0A0C4DH67 115 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 LOC102723532A0A0G2JNH3 316 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 CDC14CA4D256 554 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 EIF3HO15372 352 aaKnown RBP eCLIP14.41□□□□□ -0.1
VPS39-210ENST00000568357 RAB40ALP0C0E4 278 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 RPA3P35244 121 aaPredicted RBP14.41□□□□□ -0.1
VPS39-210ENST00000568357 RGS4P49798 205 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 POLE2P56282 527 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 SLC7A5Q01650 507 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 PRDX1Q06830 199 aaKnown RBP14.41□□□□□ -0.1
VPS39-210ENST00000568357 IL10RAQ13651 578 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 ZC3H12BQ5HYM0 836 aaKnown RBP14.41□□□□□ -0.1
VPS39-210ENST00000568357 FRMPD2BQ6IN97 320 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 FAM198BQ6UWH4 519 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 TMEM207Q6UWW9 146 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 ZC3HC1Q86WB0 502 aaKnown RBP14.41□□□□□ -0.1
VPS39-210ENST00000568357 OR4N4Q8N0Y3 316 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 FBXO25Q8TCJ0 367 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 ZNF592Q92610 1267 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 LINGO1Q96FE5 620 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 ZNF285Q96NJ3 590 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 GBP5Q96PP8 586 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 DPH2Q9BQC3 489 aaPredicted RBP14.41□□□□□ -0.1
VPS39-210ENST00000568357 MCMBPQ9BTE3 642 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 LRRC1Q9BTT6 524 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 RAB17Q9H0T7 212 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 IRAK4Q9NWZ3 460 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 GEMIN8Q9NWZ8 242 aaKnown RBP14.41□□□□□ -0.1
VPS39-210ENST00000568357 TAC3Q9UHF0 121 aa14.41□□□□□ -0.1
VPS39-210ENST00000568357 A0A0J9YVX5 310 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 OR2A25A4D2G3 310 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 CXorf49A8MYA2 514 aaPredicted RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 C8GP07360 202 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 ATXN8OSP0DMR3 200 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 AGXTP21549 392 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 IMPA1P29218 277 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 CMPK1P30085 196 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 GPX6P59796 221 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 IL2P60568 153 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 DCDP81605 110 aaKnown RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 CKAP4Q07065 602 aaKnown RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 PDAP1Q13442 181 aaKnown RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 PHKG1Q16816 387 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 UGT8Q16880 541 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 WASHC2DQ5SRD0 308 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 ICE2Q659A1 982 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 LRRC8EQ6NSJ5 796 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 FAM45BPQ6NSW5 357 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 MBOAT1Q6ZNC8 495 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 SYVN1Q86TM6 617 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 SLC26A11Q86WA9 606 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 FAM45AQ8TCE6 357 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 MCOLN3Q8TDD5 553 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 APOBEC4Q8WW27 367 aaKnown RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 CCDC138Q96M89 665 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 SELENOSQ9BQE4 189 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 NDC1Q9BTX1 674 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 SYNPO2LQ9H987 977 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 PARVBQ9HBI1 364 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 MRPS30Q9NP92 439 aaKnown RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 ENAMQ9NRM1 1142 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 ABCF3Q9NUQ8 709 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 STOX2Q9P2F5 926 aaPredicted RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 IKZF3Q9UKT9 509 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 TCFL5Q9UL49 500 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 CORO1CQ9ULV4 474 aaPredicted RBP14.4□□□□□ -0.1
VPS39-210ENST00000568357 KCNMB2Q9Y691 235 aa14.4□□□□□ -0.1
VPS39-210ENST00000568357 SPTBP11277 2137 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 TCRBV9S1A1TA0A576 114 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ESYT3A0FGR9 886 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ZNF839A8K0R7 811 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 SLC16A5O15375 505 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 SRPX2O60687 465 aaPredicted RBP14.39□□□□□ -0.11
VPS39-210ENST00000568357 KLF7O75840 302 aaPredicted RBP14.39□□□□□ -0.11
VPS39-210ENST00000568357 C1QAP02745 245 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ITGAXP20702 1163 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 SAT1P21673 171 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 ALAS2P22557 587 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 VSX2P58304 361 aaPredicted RBP14.39□□□□□ -0.11
VPS39-210ENST00000568357 CAV1Q03135 178 aa14.39□□□□□ -0.11
VPS39-210ENST00000568357 NCF4Q15080 339 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms