RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ARHGEF33A8MVX0 844 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 KRT14P02533 472 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 CHRM3P20309 590 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 CMPK1P30085 196 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 MAGEA3P43357 314 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 CLCN7P51798 805 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 FASTKQ14296 549 aaKnown RBP16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 TRIP13Q15645 432 aaPredicted RBP16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 PRTGQ2VWP7 1150 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 ACSBG2Q5FVE4 666 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 PRAMEF13Q5VWM6 474 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 ANKRD22Q5VYY1 191 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 LMNTD2Q8IXW0 634 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 OR4N4Q8N0Y3 316 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 SNRNP40Q96DI7 357 aaKnown RBP16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 ZFYVE21Q9BQ24 234 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 FAM114A2Q9NRY5 505 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 LUZP4Q9P127 313 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 CTSFQ9UBX1 484 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 CDC23Q9UJX2 597 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 FBXL4Q9UKA2 621 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 MED16Q9Y2X0 877 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 A0A0J9YVX5 310 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 ZCWPW2A0A1B0GU75 182 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 MASP2O00187 686 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 AGFG2O95081 481 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 MED26O95402 600 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 OR1D4P47884 311 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 KLHL38Q2WGJ6 581 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 ZADH2Q8N4Q0 377 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 KCNJ9Q92806 393 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 VPS50Q96JG6 964 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 PBKQ96KB5 322 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 PLCD4Q9BRC7 762 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 DPH7Q9BTV6 452 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 LRRC4CQ9HCJ2 640 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF304Q9HCX3 659 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 SAMD15Q9P1V8 674 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 JRKLQ9Y4A0 524 aa16.44■□□□□ 0.22
VPS9D1-203ENST00000563798 A0A1W2PQ72 361 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF839A8K0R7 811 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 E5RI56 91 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 NRP2O60462 931 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 USP1O94782 785 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 CATP04040 527 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 CARSP49589 748 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 YBX1P67809 324 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 PRDX1Q06830 199 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 DHX34Q14147 1143 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 MUM1Q2TAK8 710 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 TTLL9Q3SXZ7 439 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF425Q6IV72 752 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 PAQR7Q86WK9 346 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 REXO1L1PQ8IX06 675 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 OR11G2Q8NGC1 345 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 SSC4DQ8WTU2 575 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 COG1Q8WTW3 980 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 ASB11Q8WXH4 323 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 INPP5DQ92835 1189 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 MAGOHBQ96A72 148 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 C19orf60Q96EN9 201 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 MVB12AQ96EY5 273 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 C10orf90Q96M02 699 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 SERPINB12Q96P63 405 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 PKP4Q99569 1192 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 TRIM56Q9BRZ2 755 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 ZBTB20Q9HC78 741 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 ZC3H7BQ9UGR2 993 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 PCDHGA10Q9Y5H3 936 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 COMMD10Q9Y6G5 202 aa16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 SPTAN1Q13813 2472 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-203ENST00000563798 IGKV1-8A0A0C4DH67 115 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 E7ENX8 843 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 GFYI3L273 518 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 SEMA7AO75326 666 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 CBX6O95503 412 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 MPC1LP0DKB6 136 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ATXN8OSP0DMR3 200 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ENO3P13929 434 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ITGA3P26006 1051 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 COILP38432 576 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 VPS41P49754 854 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 TAP2Q03519 686 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 KCTD19Q17RG1 926 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 TUBB8Q3ZCM7 444 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ATG9BQ674R7 924 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF470Q6ECI4 717 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 CASC4Q6P4E1 433 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF549Q6P9A3 640 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 CYHR1Q6ZMK1 362 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 LRRC56Q8IYG6 542 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ARHGEF39Q8N4T4 335 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 DTWD1Q8N5C7 304 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 GIMAP7Q8NHV1 300 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 STT3BQ8TCJ2 826 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 PPP4R1Q8TF05 950 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 ZNF669Q96BR6 464 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 FAM136AQ96C01 138 aa16.42■□□□□ 0.22
VPS9D1-203ENST00000563798 OR2A5Q96R48 311 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms