RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TMPRSS3P57727 454 aa9□□□□□ -0.97
LDLR-211ENST00000560173 YBX1P67809 324 aaKnown RBP9□□□□□ -0.97
LDLR-211ENST00000560173 USP10Q14694 798 aaKnown RBP9□□□□□ -0.97
LDLR-211ENST00000560173 PPP1R3AQ16821 1122 aa9□□□□□ -0.97
LDLR-211ENST00000560173 DEFB110Q30KQ9 67 aa9□□□□□ -0.97
LDLR-211ENST00000560173 MANEAQ5SRI9 462 aa9□□□□□ -0.97
LDLR-211ENST00000560173 GRTP1Q5TC63 336 aa9□□□□□ -0.97
LDLR-211ENST00000560173 FCRL6Q6DN72 434 aa9□□□□□ -0.97
LDLR-211ENST00000560173 FIGLAQ6QHK4 219 aa9□□□□□ -0.97
LDLR-211ENST00000560173 SUSD1Q6UWL2 747 aa9□□□□□ -0.97
LDLR-211ENST00000560173 SBSNQ6UWP8 590 aa9□□□□□ -0.97
LDLR-211ENST00000560173 C6orf15Q6UXA7 325 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 MBOAT1Q6ZNC8 495 aa9□□□□□ -0.97
LDLR-211ENST00000560173 SYTL1Q8IYJ3 562 aa9□□□□□ -0.97
LDLR-211ENST00000560173 DNAJC22Q8N4W6 341 aa9□□□□□ -0.97
LDLR-211ENST00000560173 ESX1Q8N693 406 aa9□□□□□ -0.97
LDLR-211ENST00000560173 GALNT6Q8NCL4 622 aa9□□□□□ -0.97
LDLR-211ENST00000560173 PPFIBP2Q8ND30 876 aa9□□□□□ -0.97
LDLR-211ENST00000560173 ANKRD49Q8WVL7 239 aa9□□□□□ -0.97
LDLR-211ENST00000560173 CRELD1Q96HD1 420 aa9□□□□□ -0.97
LDLR-211ENST00000560173 CCDC138Q96M89 665 aa9□□□□□ -0.97
LDLR-211ENST00000560173 CCNL2Q96S94 520 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 ACAT2Q9BWD1 397 aa9□□□□□ -0.97
LDLR-211ENST00000560173 PRORYQ9H606 182 aa9□□□□□ -0.97
LDLR-211ENST00000560173 CAB39LQ9H9S4 337 aa9□□□□□ -0.97
LDLR-211ENST00000560173 GPAMQ9HCL2 828 aa9□□□□□ -0.97
LDLR-211ENST00000560173 SLC6A20Q9NP91 592 aa9□□□□□ -0.97
LDLR-211ENST00000560173 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 STOX2Q9P2F5 926 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 PCDHB3Q9Y5E6 796 aa9□□□□□ -0.97
LDLR-211ENST00000560173 SPTA1P02549 2419 aa9□□□□□ -0.97
LDLR-211ENST00000560173 TLN1Q9Y490 2541 aaKnown RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 PIEZO2Q9H5I5 2752 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 OR2A25A4D2G3 310 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 NPEPPSL1A6NEC2 478 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 GOLGA6L10A6NI86 522 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 TARM1B6A8C7 271 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CDC7O00311 574 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 TERTO14746 1132 aaKnown RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 EFSO43281 561 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 NRP2O60462 931 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CTSVO60911 334 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CPNE3O75131 537 aaKnown RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 CCNDBP1O95273 360 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 NTRK1P04629 796 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CTSBP07858 339 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 LIFP15018 202 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 STMN1P16949 149 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 WT1P19544 449 aaPredicted RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 CMPK1P30085 196 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 RAB10P61026 200 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 TBPL1P62380 186 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 ABHD18Q0P651 414 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 TSTA3Q13630 321 aaPredicted RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 NAA25Q14CX7 972 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 PRAMEF17Q5VTA0 474 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 ICE2Q659A1 982 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 AGTRAPQ6RW13 159 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 LRIG3Q6UXM1 1119 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CMC1Q7Z7K0 106 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 ADAMTSL2Q86TH1 951 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 TMEM126BQ8IUX1 230 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 IL22RA1Q8N6P7 574 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 SLC38A9Q8NBW4 561 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 ZUFSPQ96AP4 578 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 FBXL8Q96CD0 374 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 LRFN5Q96NI6 719 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 UBL7Q96S82 380 aaPredicted RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 DERL2Q9GZP9 239 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CPNE5Q9HCH3 593 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 CCDC177Q9NQR7 707 aaPredicted RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 WDR70Q9NW82 654 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 ARL15Q9NXU5 204 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 EURLQ9NYK6 297 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 TAC3Q9UHF0 121 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 SERTAD3Q9UJW9 196 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 NOVA2Q9UNW9 492 aaKnown RBP8.99□□□□□ -0.97
LDLR-211ENST00000560173 PLCL2Q9UPR0 1127 aa8.99□□□□□ -0.97
LDLR-211ENST00000560173 ANKRD12Q6UB98 2062 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 IGKV1-8A0A0C4DH67 115 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 LOC101059948A0A1B0GTJ6 334 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 HMX2A2RU54 273 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 E7EQ34 232 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 K7ENP7 123 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 TK2O00142 265 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ZSCAN9O15535 394 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 SASH3O75995 380 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 OR2B3O76000 313 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 MT-ND3P03897 115 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 ABHD2P08910 425 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 HIST1H2AGP0C0S8 130 aaPredicted RBP8.98□□□□□ -0.97
LDLR-211ENST00000560173 FAM153BP0C7A2 387 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 SLC35E2BP0CK96 405 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 CCDC166P0CW27 439 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 MYBL2P10244 700 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 HIST1H2ADP20671 130 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 CRABP2P29373 138 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 RORAP35398 523 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 GCGRP47871 477 aa8.98□□□□□ -0.97
LDLR-211ENST00000560173 CSRP3P50461 194 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms